Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0689 ATGTCGATTTCTGGTATACAGGGCCAGCTTCTTGAGGTTACAGTGGTTGGATGCAATAAATTGAAGGACACAGAATGGATTTCAAGGCAAGATCCATATGTTTGCCTCGAATATGGTAGCACCAAGTTCCGTACAAGAACCTGTACAGATGGTGGCAAGAACCCTACATTTCAAGAGAAATTTGTGTTTACATTAATCGAAGGCCTTCGCGAGGTGAATGCTGTGGTTTGGAATAGCAATACCCTCACTTATGACGACTTTATTGGCAGCGGAAAGATTCAATTGCAGAAGGTTCTTTCCCAGGGATACGATGATACTGCTTGGCCCCTTCAGACTAAGACTGGCAGACATGCGGGAGAGGTTCGACTGATATTGCACTATGCAAATGCCAGAAAACCAGAAACAAGCTTTGCTCCATCAGCACCACCGTATGTAGCACCTCCTGCGCCCCAAGTCTCTCTATACTCTGCTCCTCCACCAGTGACTGCTGGTCCTTATCCATCAGCGGCTACAGCCTATCCAGCGACATTTCCCTACCCTTCATACCCACCAAATTCAGGAGCATATCCAACATCGTCATACCCTCCCCCTCAGCCTTCAGCTTATCCTCCACAGCCGTACCCACCACATTCAGCTTATCCCCCAGCACCATACCCACCACCATCAGGTTATCCTCCGCCTCCACAAGCCTCACCATATCATCCTCCAGGTCATTACCCTGGATTGTATCCTCCACCATACTGA 744 0.4852 MSISGIQGQLLEVTVVGCNKLKDTEWISRQDPYVCLEYGSTKFRTRTCTDGGKNPTFQEKFVFTLIEGLREVNAVVWNSNTLTYDDFIGSGKIQLQKVLSQGYDDTAWPLQTKTGRHAGEVRLILHYANARKPETSFAPSAPPYVAPPAPQVSLYSAPPPVTAGPYPSAATAYPATFPYPSYPPNSGAYPTSSYPPPQPSAYPPQPYPPHSAYPPAPYPPPSGYPPPPQASPYHPPGHYPGLYPPPY* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0689 247 MobiDBLite consensus disorder prediction 187 247 - -
Vvi3g0689 247 CDD C2 11 108 - -
Vvi3g0689 247 PRINTS Proline rich extensin signature 215 231 - -
Vvi3g0689 247 PRINTS Proline rich extensin signature 156 168 - -
Vvi3g0689 247 PRINTS Proline rich extensin signature 188 209 - -
Vvi3g0689 247 PRINTS Proline rich extensin signature 134 150 - -
Vvi3g0689 247 Gene3D C2 domain 9 129 IPR035892 -
Vvi3g0689 247 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 129 IPR035892 -
Vvi3g0689 247 SMART C2_3c 10 107 IPR000008 -
Vvi3g0689 247 ProSiteProfiles C2 domain profile. 1 109 IPR000008 -
Vvi3g0689 247 PANTHER CONSERVED SERINE PROLINE-RICH PROTEIN (AFU_ORTHOLOGUE AFUA_2G01790) 4 243 - -
Vvi3g0689 247 Pfam C2 domain 10 101 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0689 Vvi-Chr3 5962731 5966397 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0689 - - vvi:100241815 345.51