Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0687 ATGGCTGTTTCTCAATCCCCCATCATGGCTTCTTTTTTATTCTCTTTCTTCTTCCTTTTAGCCGCCCTATTCTCCGCCTCCGCCTCCGCTGCCGACATGTCCATCATCAGCTACGGGGATCGTCTCGAGAAGAGGACGGACGCGGAGGTCATGGCGGTGTACGAGGCGTGGCTGGTGAAGCATGGGAAGTCGTACAACGCGTTGGGGGAGAGAGAGAGGCGTTTTGAGATTTTCAAGGATAATCTCAGGTTCATTGAGGAGCATAACGCTGTGAACCGGACTTACAAGGTTGGGTTGAATAGGTTCGCCGATCTGACCAACGAGGAGTACCGGTCGAGGTATTTGGGCAGGCGCGATGAGACCCGGCGGGGTTTGAGAGCGAGCAGGGTTAGCGATCGGTATTCCTTTCGGGCCGGCGAAGACTTGCCGGAGTCGGTGGACTGGAGGGAGAAAGGCGCCGTTGTTCCTGTGAAGGATCAAGGCAACTGCGGGAGTTGCTGGGCATTCTCGACCATTGCTGCTGTGGAAGGGATAAACCAAATAGCAACGGGGGATCTGATCTCTCTATCAGAGCAGGAGCTGGTGGATTGTGATAAGTCATACAACCAAGGATGCAATGGAGGTCTCATGGACTATGCTTTTGAATTCATCATCAACAATGGTGGCATTGATAGCGAAGAAGATTACCCTTACCGGGCGGCTGATACAACCTGTGATCCTAACCGGAAAAATGCTCGGGTTGTGTCCATTGATGGATATGAAGATGTTCCACAAAACGATGAGAGATCCTTGAAGAAAGCTGTGGCAAATCAACCAGTTAGTGTTGCCATCGAAGCCGGTGGCAGGGCTTTCCAACTCTACCAGTCAGGTGTATTTACCGGTCAGTGCGGGACACAATTGGATCATGGTGTAGTTGCTGTGGGATATGGTACAGAAAATAGTGTGGACTACTGGATTGTTAGGAACTCATGGGGCCCTAACTGGGGGGAGAGTGGATATATCAAGTTGGAGCGTAATTTGGCCGGCACTGAAACTGGCAAGTGCGGGATTGCAATAGAACCCTCTTACCCAATCAAGAATGGGCAGAACCCTCCTAACCCTGGTCCATCCCCTCCTTCTCCTTCCAAGCCGAGTGTAGTCTGCGATGAATACTACACATGCCCTGAGGAAAGCACATGCTGTTGTATCTATGAGTACGCTGGTTTCTGCTTTGAATGGGGATGCTGCCCTCTTGAGGGTGCCACCTGTTGTGACGACCATTACAGCTGCTGCCCTCACGAATATCCCGTCTGTGATGTTGATGCTGGAACCTGCCAAATGAGCAAGGGCAACCCATTGTCGGTAAAAGCATGGAGGCGAACCCCTGCTAGACCCGTTTTTGCTCCCCGGCCTGTTATTGAGGTCATCTAG 1410 0.517 MAVSQSPIMASFLFSFFFLLAALFSASASAADMSIISYGDRLEKRTDAEVMAVYEAWLVKHGKSYNALGERERRFEIFKDNLRFIEEHNAVNRTYKVGLNRFADLTNEEYRSRYLGRRDETRRGLRASRVSDRYSFRAGEDLPESVDWREKGAVVPVKDQGNCGSCWAFSTIAAVEGINQIATGDLISLSEQELVDCDKSYNQGCNGGLMDYAFEFIINNGGIDSEEDYPYRAADTTCDPNRKNARVVSIDGYEDVPQNDERSLKKAVANQPVSVAIEAGGRAFQLYQSGVFTGQCGTQLDHGVVAVGYGTENSVDYWIVRNSWGPNWGESGYIKLERNLAGTETGKCGIAIEPSYPIKNGQNPPNPGPSPPSPSKPSVVCDEYYTCPEESTCCCIYEYAGFCFEWGCCPLEGATCCDDHYSCCPHEYPVCDVDAGTCQMSKGNPLSVKAWRRTPARPVFAPRPVIEVI* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0687 469 FunFam Cysteine protease 1 378 441 - -
Vvi3g0687 469 Gene3D Granulin 377 441 IPR037277 -
Vvi3g0687 469 Pfam Granulin 392 439 IPR000118 -
Vvi3g0687 469 SMART pept_c1 142 358 IPR000668 GO:0006508|GO:0008234
Vvi3g0687 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 300 310 IPR025660 -
Vvi3g0687 469 FunFam Cysteine protease 1 34 360 - -
Vvi3g0687 469 Gene3D Cysteine proteinases 33 360 - -
Vvi3g0687 469 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 48 352 IPR013128 GO:0008234
Vvi3g0687 469 CDD Peptidase_C1A 143 357 IPR039417 -
Vvi3g0687 469 SUPERFAMILY Cysteine proteinases 46 358 IPR038765 -
Vvi3g0687 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 317 336 IPR025661 -
Vvi3g0687 469 SUPERFAMILY Granulin repeat 379 412 - -
Vvi3g0687 469 SMART GRAN_2 381 438 IPR000118 -
Vvi3g0687 469 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 160 171 IPR000169 -
Vvi3g0687 469 PRINTS Papain cysteine protease (C1) family signature 160 175 IPR000668 GO:0006508|GO:0008234
Vvi3g0687 469 PRINTS Papain cysteine protease (C1) family signature 302 312 IPR000668 GO:0006508|GO:0008234
Vvi3g0687 469 PRINTS Papain cysteine protease (C1) family signature 317 323 IPR000668 GO:0006508|GO:0008234
Vvi3g0687 469 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
Vvi3g0687 469 SMART Inhibitor_I29_2 54 110 IPR013201 -
Vvi3g0687 469 Pfam Papain family cysteine protease 142 358 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0687 Vvi-Chr3 5934501 5937197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0687 K25900 - vvi:100252080 907.131