Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0682 ATGAGGACATTGTGTCTCACAAGATTATGGGGTTGGGCTAAACAAACTCTTACACTAAAACAATTGGGAGAGAAAGCGAAACTGCAATACATAGAGAAGGCAGGCCACCTAGCTCAATCAGAGAGGCCTTGTGTATACAACGCGCACCTCAAGCAGATTCTAGCCTCTTTAACAACAGATAAGCAGTTAAAGAGAGATGGGTCTGGTTTCTCTCTCAACTCAGACTCAGTCTCAGTTTCAGGCTCTCTGATGGGTGAGCAAACCCAAACCCAAACTACTCAGCCACCCTCTTCTTTACCCGAGAATCCATCGCCGGCGAAGTCCCGGAAGCTGTCCTCTCACTCTTCTCCACGGACGGCGGCCATTTTGCTGCCAATTACGAGACTGTTGTCTTCTGATGATGTTGTCGCTGCCGCTCTCCGCCACCTGAGAAGCTCCGACCCGGTTCTTGCTCCGGTGATAGATGCGTATGAGCCACCGAAATTCGAGAATTCGGACACTCCGTTTCTGGCTTTAGCGAAGAGCATTTTATACCAGCAAATTACGCACAAGGCTGGCACCACCATTTACAACCGCTTTGTGTCGCTCTGCGGCGGGGAGACTAGGGTTTGTCCAATCTCGGTTCTGGCGCTGACCCCTCCGCAGCTTCTTCAAATTGGGGTTTCGGCTCGGAAAGTGAGCTTCTTGCACGACCTTGCGAACAAGTATCGGACCGGAATTTTATCGGATTCGAAGATTTTGACGATGGAAGATAGGGCTTTGGTTTCATTGATAGCGATGGTGAAGGGTTTTGGCGTGTTGTCCGTACACATGTTCATGATCTTCTCTCTTCACCGCCCCGATGTGCTTCCGGTGGGCGACGCTAATCTCCGAAAAGGGGTTCAAATGCTCTACGGTCTTGAAGAATTGCCGCGGCCTTCGCAGATGGAGAAGCTCTGCGAGCGGTGGAGGCCTTATAGGTCTGTTGCTTCTTGGTATATATGGAGACTAAGTGAGGCCAATGGAGTTCAGGGCAAGGCTGAATCCGGAGAAACTGGTGCTGGATCGCCTAAGGGACCTGCAACAACTTGA 1071 0.5079 MRTLCLTRLWGWAKQTLTLKQLGEKAKLQYIEKAGHLAQSERPCVYNAHLKQILASLTTDKQLKRDGSGFSLNSDSVSVSGSLMGEQTQTQTTQPPSSLPENPSPAKSRKLSSHSSPRTAAILLPITRLLSSDDVVAAALRHLRSSDPVLAPVIDAYEPPKFENSDTPFLALAKSILYQQITHKAGTTIYNRFVSLCGGETRVCPISVLALTPPQLLQIGVSARKVSFLHDLANKYRTGILSDSKILTMEDRALVSLIAMVKGFGVLSVHMFMIFSLHRPDVLPVGDANLRKGVQMLYGLEELPRPSQMEKLCERWRPYRSVASWYIWRLSEANGVQGKAESGETGAGSPKGPATT* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0682 356 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 70 340 - -
Vvi3g0682 356 Pfam HhH-GPD superfamily base excision DNA repair protein 174 318 IPR003265 GO:0006284
Vvi3g0682 356 Gene3D Hypothetical protein; domain 2 166 279 - -
Vvi3g0682 356 Gene3D - 141 329 - -
Vvi3g0682 356 FunFam DNA-3-methyladenine glycosylase II 165 279 - -
Vvi3g0682 356 SUPERFAMILY DNA-glycosylase 158 330 IPR011257 GO:0003824|GO:0006281
Vvi3g0682 356 MobiDBLite consensus disorder prediction 77 116 - -
Vvi3g0682 356 SMART endo3end 177 332 IPR003265 GO:0006284
Vvi3g0682 356 CDD ENDO3c 169 331 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0682 Vvi-Chr3 5887915 5896910 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0682 K01247 - vvi:100852509 534.258