Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0680 ATGAATTCGGGAGGTGAAGTGGGTGTTCAGATCCAGCAGGGTCGTGGATTGCCTGATTTTCTTCAGAGTGTCAATCTCAAGTATGTGAAATTGGGGTATCATTATCTGATAACCCATTTGTTGACTCTCTGTTTGATCCCTTTAATGGCCCTGATTATCGTCGAGGCTTCACAGAAGAACCCAGATGATATTCATCAGCTTTGGCTTCACCTCCAGTACAATCTCGTCAGTATCATCATTTGCTCTGCTTTTCTCGTTTTCGGATCCACCGTCTACATCATGACTCGTCCTCGATCCATTTACCTCGTCGACTACGCCTGTTATCGCCCGCCGTCCCACCTCCAAGTCCGGTACCATCAGTTCATGGAGCATTCGAGGCTCACCGGCGACTTCGACGAGTCGGCGTTGGAGTTCCAGAGAAAGATCCTCGAGCGGTCTGGGCTCGGAGAGGAGACTTATGTGCCGGAGGCGATGCATTATATTCCCCCCCAGCCTTCCATGGCGGCGGCACGTGAAGAGGCCGAGCAGGTGATGTTTGGTTCATTGGATAAGCTATTTGCTAATACCAATGTTAAGCCTAAGGACATTGGAATACTTGTTGTGAATTGTAGTCTGTTTAATCCAACTCCATCCTTGTCTGCTATGATTGTTAACAAGTATAAATTGAGGGGTAATATTAGGAGTTTTAACCTAGGAGGAATGGGGTGTAGTGCTGGTGTCATAGCTGTTGATTTGGCTAAAGATATGTTGCAAGTTCATAGGAATACTTATGCAGTTGTTGTTAGTACTGAGAACATTACTCAGAATTGGTATTTTGGGAACAAGAAATCCATGTTAATCCCCAATTGTTTATTTCGGGTTGGGGGAGCAGCTGTTTTGCTGTCAAATAAATCTGGAGACCGAAGGCGGGCCAAGTATAAGCTTGTTCATCTAGTGAGGACGCACCGTGGGGCTGATGATAAGGCATTTCGGTGTGTTTATCAGGAGCAGGATGATGCTGGGAAAACTGGTGTTTCATTGTCCAAGGATCTCATGGCAATTGCAGGGGGTGCCCTTAAGACTAATATCACCACATTGGGTCCCCTTGTGCTTCCAATTAGTGAGCAGCTTCTTTTCTTTGCCACACTTGTTGCCAAGAAGTTGTTTAATGCTAAGGTCAAGCCTTATATACCGGATTTCAAGCTTGCGTTTGAGCACTTCTGCATACATGCTGGTGGGAGGGCTGTGATTGATGAACTTGAGAAGAATCTGCAGCTTTTGCCCTCACATGTTGAGGCTTCTCGGATGACTCTTCACCGGTTTGGTAACACTTCATCAAGTTCCATTTGGTATGAGCTATCTTACATCGAGGCCAAGGGGAGGATGAGGAAGGGGAACCGAGTGTGGCAGATTGCTTTTGGAAGTGGATTCAAATGTAACAGTGCAGTTTGGCAGGCCCTTCGGAATGTGAATCCCTCTCCTAATGGCCCATGGGAAGATTGCATCAACAAGTATCCAGTTGAGAACAATCCTTATCAAAATTCCTGA 1527 0.4617 MNSGGEVGVQIQQGRGLPDFLQSVNLKYVKLGYHYLITHLLTLCLIPLMALIIVEASQKNPDDIHQLWLHLQYNLVSIIICSAFLVFGSTVYIMTRPRSIYLVDYACYRPPSHLQVRYHQFMEHSRLTGDFDESALEFQRKILERSGLGEETYVPEAMHYIPPQPSMAAAREEAEQVMFGSLDKLFANTNVKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGAAVLLSNKSGDRRRAKYKLVHLVRTHRGADDKAFRCVYQEQDDAGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLVAKKLFNAKVKPYIPDFKLAFEHFCIHAGGRAVIDELEKNLQLLPSHVEASRMTLHRFGNTSSSSIWYELSYIEAKGRMRKGNRVWQIAFGSGFKCNSAVWQALRNVNPSPNGPWEDCINKYPVENNPYQNS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0680 508 PANTHER 3-KETOACYL-COA SYNTHASE 71 501 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi3g0680 508 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 398 478 IPR013747 -
Vvi3g0680 508 CDD CHS_like 82 477 - -
Vvi3g0680 508 SUPERFAMILY Thiolase-like 86 304 IPR016039 GO:0016746
Vvi3g0680 508 SUPERFAMILY Thiolase-like 309 478 IPR016039 GO:0016746
Vvi3g0680 508 Pfam FAE1/Type III polyketide synthase-like protein 92 381 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi3g0680 508 FunFam 3-ketoacyl-CoA synthase 110 479 - -
Vvi3g0680 508 PIRSF Very_long_ch_3-ktacl-CoA_syn 19 508 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi3g0680 508 Gene3D - 107 479 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0680 Vvi-Chr3 5870034 5873023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0680 10 500 Miscellaneous Gene Families AT1G19440 87.373 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0680 K15397 - vvi:100853861 1014.6