Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi3g0678 | ATGGCATCCAGCTCAATGTCCTCCCGCAGCTCTGGCTCATCCTGGACTGCCAAGCAAAACAAAGCCTTTGAAGAGGCGCTTGCAGTGTATGACAAGGACACCCCTGACCGCTGGTACAATGTTGCCAGGGCTGTTGGTGGGAAAACCGTGGAGGAAGTGAAGAGGCACTATGAGATCCTTGTTGAGGATATCAAGAGCATCGACTCAGACAAAGTGCCCTTCCCCAATTACAAGACTACCGGAGCTAGTGGCCGGTCCAACATGAGCGACCAGGAAAAGAGGATGATGAATCTGAAGCTCCGCTGA | 306 | 0.5261 | MASSSMSSRSSGSSWTAKQNKAFEEALAVYDKDTPDRWYNVARAVGGKTVEEVKRHYEILVEDIKSIDSDKVPFPNYKTTGASGRSNMSDQEKRMMNLKLR* | 102 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi3g0678 | 101 | ProSiteProfiles | Myb-like domain profile. | 7 | 61 | IPR001005 | - | |
| Vvi3g0678 | 101 | Gene3D | - | 5 | 74 | - | - | |
| Vvi3g0678 | 101 | SMART | sant | 11 | 63 | IPR001005 | - | |
| Vvi3g0678 | 101 | CDD | SANT | 15 | 57 | IPR001005 | - | |
| Vvi3g0678 | 101 | ProSiteProfiles | SANT domain profile. | 10 | 65 | IPR017884 | - | |
| Vvi3g0678 | 101 | SUPERFAMILY | Homeodomain-like | 14 | 67 | IPR009057 | - | |
| Vvi3g0678 | 101 | MobiDBLite | consensus disorder prediction | 76 | 101 | - | - | |
| Vvi3g0678 | 101 | FunFam | Transcription factor SRM1 | 7 | 74 | - | - | |
| Vvi3g0678 | 101 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR-RELATED | 1 | 92 | IPR044636 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi3g0678 | Vvi-Chr3 | 5847999 | 5848924 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi3g0678 | - | - | vvi:100853747 | 192.2 |