Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0674 ATGAATATCAAGGAGCTGGTTACAAACCTGCCTGTTTACAGAAGTGCTAGTGATGTCTCTGGAGAAGGATTGGGTTTAATTTTCATGCGATGGGCCTCCAAAAAGACAGCAGGATCCACAAAGAATGGAAGGGACTCCAAACCCAAGAATCTTGGGGTGAAGAAATTTGGTGGAGAGAGAGTGATACCTGGGAACATTATTGTTCGTCAACGTGGCACCCGTTTCCATCCAGGAAACTACGTTGGAATTGGAAAGGATCACACCCTATATGCTCTGAAAGAAGGTTGTGTTAAGTTTGAGAAACACAAGCTCAGTGGACGGAAGTGGGTACATGTTGAGCCCAAAGACGGGCATGTACTTCACCCTGTCTATGCAGATGCTGCTGCTCCTAGGCTCAAGACAACTGTTTAA 411 0.4574 MNIKELVTNLPVYRSASDVSGEGLGLIFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAAPRLKTTV* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0674 136 FunFam 50S ribosomal protein L27 36 127 - -
Vvi3g0674 136 NCBIfam 50S ribosomal protein L27 32 112 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 Hamap 50S ribosomal protein L27 [rpmA]. 31 115 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 ProSitePatterns Ribosomal protein L27 signature. 64 78 IPR018261 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 PANTHER RIBOSOMAL PROTEIN L27 4 125 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 PRINTS Ribosomal protein L27 signature 59 83 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 PRINTS Ribosomal protein L27 signature 34 58 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 PRINTS Ribosomal protein L27 signature 84 108 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 Gene3D - 36 128 - -
Vvi3g0674 136 Pfam Ribosomal L27 protein 32 112 IPR001684 GO:0003735|GO:0005840|GO:0006412
Vvi3g0674 136 SUPERFAMILY Ribosomal L27 protein-like 32 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0674 Vvi-Chr3 5801314 5801906 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0674 K02899 - vvi:100853593 283.108