Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0672 ATGGCGGAAGAAGCCATATTAGGTCATCTGGAGAAGAATGTCGAAATCTCCGATTCAGGCGACTTCGCTTCCCAAAGCGGAATCGACCACAACGAGATTGTCAACGTCATCAAGAGCCTCCACGGTTTCAGACTCGTCGATGCTCAGGATATCAAGAGGGAAAAGTGGGTGCTCACCGATGAAGGCAAGTTATATGCTGCGGCTGGCTCACCGGAAGTGCAATTGTTCTTGGCCGTACCACCTGAGGGCATATCACGAGAAGAACTGCAGAGAAAGGTTGACCCCTCGGTGTACAAAATAGGTTGCTCACAGGCCATAAAGAATAAATGGTTGGAGATAGGAAAACAACAAGTGTCCAGAAAGGTTCAACAAGTGGAGGACACAGCCAAAGATCTGCTTACACGGATCCAAAATGAGGAGGCACTTAGCCAAGCTGACATTGACGCTCTCAAACGAAGAAAGCTTATTGCTCTGCAGACATGGAAAGGTTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAGAGAAAGAAAGTTGCTACTGATTTGACTCGAGAAAATCTGCAAAGGGGTGATTGGAAGGAGCTAGAGTTCAAAGAGTATAATTTCAATGCCAAAGGTCAATCTGCTGAAGGTGGCCATCTTCATCCATTGCTCAAGGTACGGCGACAACTGCAGATGATTTTTCTCCAAATGGGTTTTGAGGAGATGCCAACAAACAATTTTGTTGAAAGCAGCTTCTGGAATTTTGATGCACTGTTCCAGCCACAACAACACCCTGCTCGTGATTCACATGATACCTTCTTCCTGCAAGCTCCTTCCACTACAAAGATGCTGCCTGAAGATTATGTTGAGCGGGTGAAGCATGTTCATGAGCATGGTGGTTATGGATCCAGAGGATATGGATATGATTGGAAAAGGGAGGAAGCAAACAAGAACCTACTGCGAACTCACACCACTGCTGTTTCCTCAAGGATGCTTTACTTGCTAGCACAGAAACCTTTTGCCCCTAAAAAGTACTACTCCATTGATCGTGTTTTCAGAAATGAAGCTGTTGATCGAACACATCTTGCAGAGTTTCATCAGATAGAAGGCCTTGTATGTGATAGGGGGCTAACTCTTGGCGATCTGATTGGAGTCTTACAGGACTTCTTTTCACGTCTAGGAATGTCCCAGCTACGTTTCAAGCCTGCTTACAATCCATACACTGAACCCAGCATGGAAATCTTCAGTTATCATGAAGGCTTGAAGAAATGGGTAGAGATAGGAAATTCTGGCATGTTCAGACCTGAAATGTTGCTTCCTATGGGACTCCCAGAAGATGTCCGGGTTATTGCATGGGGCCTTTCCCTTGAGAGACCAACCATGATATTGTATGGTGTAGACAACATTCGGGATCTCTTCGGGCACAAGGTGGATCTTGGACTCATCAAGAGAAACCCAATATGTCGCCTTGGAATTGAGTAG 1467 0.4554 MAEEAILGHLEKNVEISDSGDFASQSGIDHNEIVNVIKSLHGFRLVDAQDIKREKWVLTDEGKLYAAAGSPEVQLFLAVPPEGISREELQRKVDPSVYKIGCSQAIKNKWLEIGKQQVSRKVQQVEDTAKDLLTRIQNEEALSQADIDALKRRKLIALQTWKGYSVRKGPNYAPKRKKVATDLTRENLQRGDWKELEFKEYNFNAKGQSAEGGHLHPLLKVRRQLQMIFLQMGFEEMPTNNFVESSFWNFDALFQPQQHPARDSHDTFFLQAPSTTKMLPEDYVERVKHVHEHGGYGSRGYGYDWKREEANKNLLRTHTTAVSSRMLYLLAQKPFAPKKYYSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLGDLIGVLQDFFSRLGMSQLRFKPAYNPYTEPSMEIFSYHEGLKKWVEIGNSGMFRPEMLLPMGLPEDVRVIAWGLSLERPTMILYGVDNIRDLFGHKVDLGLIKRNPICRLGIE* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0672 488 NCBIfam phenylalanine--tRNA ligase subunit alpha 170 480 IPR004529 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Vvi3g0672 488 FunFam Phenylalanine--tRNA ligase alpha subunit 216 487 - -
Vvi3g0672 488 Pfam PheRS DNA binding domain 1 3 56 IPR040724 -
Vvi3g0672 488 Gene3D - 7 199 - -
Vvi3g0672 488 PANTHER PHENYLALANYL-TRNA SYNTHETASE 50 477 - -
Vvi3g0672 488 Gene3D - 58 156 - -
Vvi3g0672 488 CDD PheRS_alpha_core 216 473 - -
Vvi3g0672 488 Gene3D - 71 125 - -
Vvi3g0672 488 Pfam PheRS DNA binding domain 3 70 125 IPR040725 -
Vvi3g0672 488 FunFam Phenylalanine--tRNA ligase alpha subunit, cytoplasmic 71 125 - -
Vvi3g0672 488 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 220 481 IPR006195 -
Vvi3g0672 488 Pfam tRNA synthetases class II core domain (F) 201 473 IPR002319 GO:0000049|GO:0004812|GO:0005524|GO:0043039
Vvi3g0672 488 SUPERFAMILY Class II aaRS and biotin synthetases 208 473 IPR045864 -
Vvi3g0672 488 Coils Coil 115 153 - -
Vvi3g0672 488 Gene3D Bira Bifunctional Protein; Domain 2 216 487 IPR045864 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0672 K01889 - vvi:100853559 991.875