Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0661 ATGGCTCAGCCTCTCGTGAAGAAGGACGACGATCGCGACGATGAAGCGGATTACTCTCCTTTTCTCGGGATTGAAAAGGGAGCTGTTCTTCAGGAAGCTAGAGTGTTCAATGATCCTCAGCTTGAGCCAAGGAGATGTTCTCAGGTCATTACAAAGCTTCTGTATCTACTGAATCAAGGAGAGACATTTACAAAGATTGAAGCCACAGAAGTGTTCTTTGCTGTCACGAAACTTTTTCAGTCTAGAGACACTGGTTTAAGGAGAATGGTGTATTTAATGATAAAGGAGCTTTCTCCTTCTGCTGATGAGGTTATTATTGTGACTAGCTCACTTATGAAGGACATGAATAGCAAGACTGATATGTATCGAGCAAATGCTATTCGGGTTCTCTGTCGAATAACGGATGGAACCCTTCTCACCCAGATTGAGCGATACTTGAAACAAGCAATAGTTGACAAGAACCCTGTTGTTGCAAGTGCAGCTCTTGTCAGTGGAATTCATCTTCTCCAGACAAACCCAGAGATAGTGAGAAGGTGGAGTAATGAAGTACAGGAAGCTGTTCAATCAAGGGCAGCACTTGTGCAATTTCATGCCCTAGCTCTCCTGCATCAGATTCGGCAGAATGATCGCTTAGCTGTTAGCAAGCTAGTCACCAGCTTAACTAGAGGAAATGTTCGCTCACCATTGGCTCAATGCCTCTTGATCCGTTATACCAGCCAGGTTATTCGAGAATCGGGCACTAACACACAAACGGGTGACCGCCCATTTTATGATTTTCTTGAGGGTTGTCTGCGTCACAAGGCAGAGATGGTGATTTTTGAAGCTGCCAGAGCAATAACAGAGCTCAGTGGTGTGACGAGTAGGGAACTGACTCCAGCAATTACTGTTCTCCAACTCTTTCTAAGTTCTTCCAAGCCAGTGCTGCGTTTTGCTGCTGTCAGGACTTTGAACAAGGTGGCAATGACACATCCAATGGCTGTAACTAACTGCAACATAGATATGGAAAGCCTAATTTCTGACCAGAACAGAAGCATTGCAACACTGGCAATCACCACTCTTCTGAAGACAGGAAATGAATCAAGTGTGGATCGCCTGATGAAGCAAATTACAAATTTCATGTCAGATATTGCTGATGAATTCAAAATTGTTGTAGTGGAAGCCATCAGATCATTGTGCTTGAAGTTTCCTTTGAAGTATAGAGCCTTGATGAACTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTACAAAAAGGCGATTGTTGATTCAATCGTGATCCTCATAAGAGATATTCCTGATGCAAAAGAAAGCGGGTTGCTTCATCTGTGTGAATTTATTGAAGATTGTGAGTTCACCTATCTTTCAACACAGATACTCCATTTTCTGGGGATTGAAGGGCCAAAAACCTCAGATCCCAGCAAATATATACGGTATATCTATAACAGAGTAATTCTTGAGAATGCAACTGTTCGAGCAAGTGCTGTAAGTACATTGGCAAAATTTGGTGCTATGGTTGATTCTTTGAAGCCACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAGGTTCGTGATAGGGCAACACTCTATCTGAACACACTTGGAGGTGACGGTTCTGTTGTTGAAACTGATAAAGATGTGAAGGATTTCCTCTTTGGGTTGCTGGACATTCCATTGGTCAACTTGGAGACCAGTTTGAAAAACTATGAGCCTTCTGAAGAACCTTTTGATATTGATTGTGTACCTAGAGAGGTTAAGTCTCAGCCACTGGCTGAGAAGAAAGCTCCAGGTAAAAAGCCAACTGGTTTGGGTGCTCCTCCAAGTGGCCCCACATCCACCGTTGATGCATACGAGAAACTGCTTTCCTCTATTCCAGAATATGCAAGCTTTGGAAAGCCTTTCAAGTCCTCAGCACCTGTAGAGCTGACAGAAGCAGAAACAGAATATGCTGTTAATGTTGTCAAGCACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACCAATACAATTCCTGAGCAATTGCTGGAAAATGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTGTGGCATTTGAGAAGCCAGATGGAGTCCCTGCAGTTGGAAAATTCTCAAATATGTTGAAGTTCATTGTTAAAGAGGTTGATCCAACTACTGGTGAGACAGAGGAAGATGGTGTCGAAGACGAATACCAGCTGGAGGACCTTGAAGTTGTTGCAGCTGATTATGTGTTGAAGGTTGGGGTCTCCAATTTCAGAAATGCATGGGAAAGCATGGGTCCAGAGTTTGAGCGGGTAGATGAATATGGACTAGGCCCTAGGGAGAGCTTGGCTGAAGCTGTGAGTACTGTGATCAGCCTTCTTGGACTGCAGCCCTGTGAGGGCACAGAGGTTGTCCCTAGCAATTCAAGGTCACACACGTGTTTACTGTCTGGTGTATTCATAGGCAATATGAAAGTGCTTGTTCGGTTATCATTTGGAATTGATGGGCCCAAGGAGGTTGCCATGAAGCTGGCTGTTAGATCCGAGGATGAAAGTGTCAGTGATGCCATTCACGAGATTGTAGCAAGCGGCTAG 2664 0.4381 MAQPLVKKDDDRDDEADYSPFLGIEKGAVLQEARVFNDPQLEPRRCSQVITKLLYLLNQGETFTKIEATEVFFAVTKLFQSRDTGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVRRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGNVRSPLAQCLLIRYTSQVIRESGTNTQTGDRPFYDFLEGCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRALMNFLSNILREEGGFEYKKAIVDSIVILIRDIPDAKESGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGAMVDSLKPRIFVLLRRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGLLDIPLVNLETSLKNYEPSEEPFDIDCVPREVKSQPLAEKKAPGKKPTGLGAPPSGPTSTVDAYEKLLSSIPEYASFGKPFKSSAPVELTEAETEYAVNVVKHIFDRHVVFQYNCTNTIPEQLLENVTVIVDASDAEEFSEVSTKPLRSLPYDSPGQTFVAFEKPDGVPAVGKFSNMLKFIVKEVDPTTGETEEDGVEDEYQLEDLEVVAADYVLKVGVSNFRNAWESMGPEFERVDEYGLGPRESLAEAVSTVISLLGLQPCEGTEVVPSNSRSHTCLLSGVFIGNMKVLVRLSFGIDGPKEVAMKLAVRSEDESVSDAIHEIVASG* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0661 887 Pfam Adaptin N terminal region 29 540 IPR002553 GO:0006886|GO:0016192|GO:0030117
Vvi3g0661 887 PIRSF Gamma-COP 7 885 IPR017106 -
Vvi3g0661 887 FunFam Coatomer subunit gamma 769 885 - -
Vvi3g0661 887 Pfam Coatomer gamma subunit appendage platform subdomain 622 767 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vvi3g0661 887 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 772 884 IPR009028 GO:0006886|GO:0016192|GO:0030117
Vvi3g0661 887 SUPERFAMILY Clathrin adaptor appendage domain 616 771 IPR013041 -
Vvi3g0661 887 Gene3D - 333 554 IPR011989 -
Vvi3g0661 887 FunFam Coatomer subunit gamma 333 541 - -
Vvi3g0661 887 Gene3D Coatomer, gamma subunit, appendage domain 616 768 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Vvi3g0661 887 PANTHER COATOMER SUBUNIT GAMMA 1 885 IPR017106 -
Vvi3g0661 887 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 770 884 IPR032154 -
Vvi3g0661 887 FunFam Coatomer subunit gamma 23 316 - -
Vvi3g0661 887 SUPERFAMILY ARM repeat 30 564 IPR016024 -
Vvi3g0661 887 Gene3D - 23 316 IPR011989 -
Vvi3g0661 887 MobiDBLite consensus disorder prediction 594 618 - -
Vvi3g0661 887 Gene3D - 769 885 IPR012295 -
Vvi3g0661 887 FunFam Coatomer subunit gamma 615 768 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0661 K17267 - vvi:100853178 1710.27