LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi3g0646	ATGGACGAAATTTGGGAGAGAGCCGTTGAAACGGCGATCGACGGCAAAACTGATGCATCTCCGGTCCGGTCGCTAACCCTGGACGGCGCTGTGAAATGCTACAGTGGCGGTCTACCACCGCCGACACTTCTCGAGAAATTCCAAAATCTCGAACACCTATCAATCGCCAACGTCGGGTTGTCGTCGCTCGAGAAATTCCCGAGACTTGGAAATCTCCAGCGACTGATTCTCTCCGACAACAGAATCTCCGGTGGCCTCGAATTCCTCGTTGAAGCGAATCTCCAGTCGCTTCGGGACTTGGATTTGTCGAACAATCGGATTCAGTACTTCGAGGACTTGGCTCCTCTGGCTCGGCTCAAGCTAGTTTCGCTGGACTTGTATGAGTGTCCTGTGACGAAGATTAAGGATTATAGGGCTAGGGTTTTTGGATTGATTGAGACGTTGAAGTACTTGGACAAGCTAGATTTTGACGAGAATGAAGAGGACGATGAAGATGAAGACGAGGAAGATGATGGTGAAGTTGACGGTGAGGATCGATCGAGGTCGGGGGGTGTTGGTAGTAGCAGGGGTGGCGATGGAGTGATTGATGTTGATGAGGATGAGAGTGAAGAAGATGGAGTTGTTGGCCTCGAAAACGGGGATGTCGAAGATGATGATGATTTAGAGGACGTTGATGTTGAGGAGAGTGGTGACGATGAGGTTGTGGAGGTTCATGAGATTGATGATAGTGACGAGGAAGAAGGGGTCGAAGAGGATGATGATGAGGAGGATGATGATGGTGATGAAGAAGTGGAAGATGAAGAGGAGGATGTGAGGCCCGGGATTGAAGGCCGGGGAATCGGTAATGGTGGGGAAATTGATGGGCATGAGCAAGGTGAGGAGGACAGTGATGATGACGGTGAGTATGAGGAAGAAGACGGTGAGGACGAGGAAGAAGCTTTCCATATCCGCCCAGTTAGGCGTGCAGAAGAAGATGGTGAAGCAAGTGATGTGGACCCTGAAAATGAAGTAGATGATGTTGTTGAAGTGGAGGAAGAGGTTGAAGATGCGGTGCAACTACCCAGAGAAGCTCAGCTACCCTCTTCTTCCCAGTCCCGTCTCAAGAGGAAGAGAGATGAAGAAAATGACGGTGCCGACATCAGCGATGATGAAAGCGTTGAGGATGTCTCATTGAAGCCTCATTAA	1185	0.4996	MDEIWERAVETAIDGKTDASPVRSLTLDGAVKCYSGGLPPPTLLEKFQNLEHLSIANVGLSSLEKFPRLGNLQRLILSDNRISGGLEFLVEANLQSLRDLDLSNNRIQYFEDLAPLARLKLVSLDLYECPVTKIKDYRARVFGLIETLKYLDKLDFDENEEDDEDEDEEDDGEVDGEDRSRSGGVGSSRGGDGVIDVDEDESEEDGVVGLENGDVEDDDDLEDVDVEESGDDEVVEVHEIDDSDEEEGVEEDDDEEDDDGDEEVEDEEEDVRPGIEGRGIGNGGEIDGHEQGEEDSDDDGEYEEEDGEDEEEAFHIRPVRRAEEDGEASDVDPENEVDDVVEVEEEVEDAVQLPREAQLPSSSQSRLKRKRDEENDGADISDDESVEDVSLKPH*	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	290	311	-	-
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	156	175	-	-
	Vvi3g0646	394	ProSiteProfiles	Leucine-rich repeat profile.	96	117	IPR001611	GO:0005515
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	156	394	-	-
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	196	270	-	-
	Vvi3g0646	394	SUPERFAMILY	L domain-like	41	158	-	-
	Vvi3g0646	394	FunFam	acidic leucine-rich nuclear phosphoprotein 32-related protein-like	5	167	-	-
	Vvi3g0646	394	Gene3D	Ribonuclease Inhibitor	5	169	IPR032675	-
	Vvi3g0646	394	PANTHER	ACIDIC LEUCINE-RICH NUCLEAR PHOSPHOPROTEIN 32	9	377	IPR045081	-
	Vvi3g0646	394	Pfam	Leucine-rich repeat	56	156	-	-
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	312	327	-	-
	Vvi3g0646	394	MobiDBLite	consensus disorder prediction	328	349	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi3g0646	Vvi-Chr3	5563779	5567120	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi3g0646	-		-	vvi:100855233	466.848