Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0645 ATGGTAGCTTCAGCTATATCAACGACCTTGAGTTCCTCTATTGTTTCTCGCAACACTTCCTCGTCCATTTCATTTTTTTCTCCCAGATACTCAACAAAACCAATTGTTTCTGCTTTGTCCAAATCTTCAAGTATTGGATTATCTAGCAAAACTTCTGGGTTAAGTCTAAAGGTTGATGAACGGGGTCGCCATGCTGGTAATCCGAGTTATGGTGCAATAGAAGCCAAAAAGGGGAACCCACCCGTAGCGCCATCTGTGATGACTCCTGGAGGACCTTTGGACCTATCAACTGTTCTATTCAGGAGTCGAATTATTTTCATCGGGCAGCCAATCAATTCAATGGTGGCTCAGCGAGTTATCTCACAGCTTGTGACTCTCGCAGCTATTGATGAGGATGCAGATATTCTGATGTATCTCAACTGCCCTGGTGGAAGCACCTATTCTGTATTGGCCATCTATGATTGCATGGCTTGGATAAAGCCTAAGGTTGGAACAGTATGTTTTGGCGTAGCTGCAAGTCAAGGAGCACTTCTTCTTGCTGGTGGGGAAAAGGGAATGCGTTATGCAATGCCAAATGCACGTATTATGGTACACCAACCGCAGGGTGGATGTGGGGGCCACGTGGAGGATGTAAGGCGCCAAGTGAATGAAGCAGTTCAATCTCGCCATAAAATTGACAAGATGTATGCTGCTTTTACTGGCCAACCTCTCGAGCAAGTGCAACAATACACTGAGAGGGATCGTTTCTTATCTGCTTCTGAGGCCATGGAGTTTGGCTTCATCGACGGTATCCTAGAAACCGAGTACTAA 810 0.4568 MVASAISTTLSSSIVSRNTSSSISFFSPRYSTKPIVSALSKSSSIGLSSKTSGLSLKVDERGRHAGNPSYGAIEAKKGNPPVAPSVMTPGGPLDLSTVLFRSRIIFIGQPINSMVAQRVISQLVTLAAIDEDADILMYLNCPGGSTYSVLAIYDCMAWIKPKVGTVCFGVAASQGALLLAGGEKGMRYAMPNARIMVHQPQGGCGGHVEDVRRQVNEAVQSRHKIDKMYAAFTGQPLEQVQQYTERDRFLSASEAMEFGFIDGILETEY* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0645 269 ProSitePatterns Endopeptidase Clp histidine active site. 187 200 IPR033135 -
Vvi3g0645 269 FunFam ATP-dependent Clp protease proteolytic subunit 74 269 - -
Vvi3g0645 269 Pfam Clp protease 94 267 IPR023562 -
Vvi3g0645 269 CDD S14_ClpP_2 94 264 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 78 268 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 65 268 IPR023562 -
Vvi3g0645 269 SUPERFAMILY ClpP/crotonase 93 267 IPR029045 -
Vvi3g0645 269 Gene3D - 74 269 - -
Vvi3g0645 269 PRINTS Clp protease catalytic subunit P signature 165 182 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 PRINTS Clp protease catalytic subunit P signature 243 262 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 PRINTS Clp protease catalytic subunit P signature 94 109 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 PRINTS Clp protease catalytic subunit P signature 134 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi3g0645 269 PRINTS Clp protease catalytic subunit P signature 186 205 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0645 Vvi-Chr3 5554460 5560379 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0645 K01358 - vvi:100852857 477.248