Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0640 ATGGCTACAGGGAAGGAAAAGAGTAGTGTTGTCCATGGCGAAGCCCAGAAGGTTGTGACGGAGTTTGATGCTCCTAAGAAGAATGGAAGAAACAAGTATGCCATTGCTTGTACTATTTTGGCTTCTATGACCTCCATTTTGTTGGGTTATGATATTGGAGTAATGAGTGGAGCGGCCATATATATAAAAAAGGACCTCAAGATCAGCGATGTAGAAGTCGAAATTCTGGTGGGAATCCTCAACGTGTATTGTTTATTCGGTTCTGCTGCCGCCGGCAGGACCTCAGACTGGATCGGTCGCCGATACACAATAGTATTGGCCTCTGTCATCTTCTTCCTCGGGGCTCTGCTCATGGGCTTCGCTACCAACTATGTTTTTCTCATGGTGGGCCGCTTCGTGGCCGGAATCGGCGTTGGCTACGCCCTCATGATCGCTCCTGTCTACGCCGCCGAGGTTTCTCCGGCGTCCTCACGTGGCTTCATCACCTCATTCCCCGAAGTTTTCATCAACGCTGGAATCTTATTCGGCTATATCTCCAACTACGCCTTCTCCAAGCTCCCAACTAACCTTGGCTGGCGATTCATGCTTGGCATCGGTGCAATTCCCTCCGTTTTCCTCGCCTTGGTCGTCATCGCCATGCCCGAGTCTCCTCGTTGGCTAGTCATGCAGGGTCAACTCGGTTTGGCCAAGCGAGTACTTGACAAAACATCTGATTCCAAAGAAGAATCCCAACTACGACTCGCTGACATCAAAGCCGCCGCCGGCATCCCAGAGGAGTGCACTGACGACGTCGTTGCAGTCCCCAAGAGGAGCCACGGCGAAGGCGTCTGGAGAGAGCTTCTCATCTTTCCCACCCCCTCCGTCCGCCGCATCCTCATCGCAGCCGTCGGCATTCACTTCTTCCAACAAGCCTCAGGCATTGACGCCGTCGTCCTCTACAGCCCAAGAATCTTCGAAAAGGCAGGCATAAAAGATGACGAACACATTCTACTCGCCACCGTCGCCGTCGGATTCGTAAAAACCTGCTTCATCCTTGTCGCCACTTTCTTACTCGACAGGGTCGGACGGCGACCGCTGCTTCTAACCAGCGTCGCAGGCATGATCTTTTCACTGGCGGCCCTAGGAATGGGACTGACCGTGATCGACCACTCAGACACCAAGTTAATCTGGGCCGTAGCTTTGAGTCTCTGCACAGTATTATCGTACGTGGCTTTCTTCTCCATCGGAATGGGGCCAATCACGTGGGTTTACAGCTCAGAGATCTTCCCACTGAGGCTACGAGCCCAGGGTTGCAGTATTGGGGTGGGCGTAAACCGAGTGACAAGTGGCGTCCTCTCAATGACTTTCATCTCACTGTACAAAGCCATCACCATTGGAGGGGCATTTTTCCTATACTCCGGCGTCGCTTTGGTCGGTTGGATTTTCTTCTATACATGGCTACCGGAAACACAGGGCAGAACCCTTGAAGATATGGAGATACTGTTCACCAACTCCAGCTGGAATAAGAAGAAGTCATCTACTAACGACACTAGCGGTAACAGCAACGATCACATTAACGGCCAGATTCAATTAGGAACTAATGGATGA 1587 0.5173 MATGKEKSSVVHGEAQKVVTEFDAPKKNGRNKYAIACTILASMTSILLGYDIGVMSGAAIYIKKDLKISDVEVEILVGILNVYCLFGSAAAGRTSDWIGRRYTIVLASVIFFLGALLMGFATNYVFLMVGRFVAGIGVGYALMIAPVYAAEVSPASSRGFITSFPEVFINAGILFGYISNYAFSKLPTNLGWRFMLGIGAIPSVFLALVVIAMPESPRWLVMQGQLGLAKRVLDKTSDSKEESQLRLADIKAAAGIPEECTDDVVAVPKRSHGEGVWRELLIFPTPSVRRILIAAVGIHFFQQASGIDAVVLYSPRIFEKAGIKDDEHILLATVAVGFVKTCFILVATFLLDRVGRRPLLLTSVAGMIFSLAALGMGLTVIDHSDTKLIWAVALSLCTVLSYVAFFSIGMGPITWVYSSEIFPLRLRAQGCSIGVGVNRVTSGVLSMTFISLYKAITIGGAFFLYSGVALVGWIFFYTWLPETQGRTLEDMEILFTNSSWNKKKSSTNDTSGNSNDHINGQIQLGTNG* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0640 528 Gene3D MFS general substrate transporter like domains 27 499 IPR036259 -
Vvi3g0640 528 ProSiteProfiles Major facilitator superfamily (MFS) profile. 37 484 IPR020846 GO:0022857
Vvi3g0640 528 SUPERFAMILY MFS general substrate transporter 24 492 IPR036259 -
Vvi3g0640 528 ProSitePatterns Sugar transport proteins signature 2. 133 158 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 CDD MFS_PLT 40 491 IPR044776 GO:0005351
Vvi3g0640 528 PRINTS Sugar transporter signature 302 312 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 PRINTS Sugar transporter signature 128 147 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 PRINTS Sugar transporter signature 419 431 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 PRINTS Sugar transporter signature 45 55 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 PRINTS Sugar transporter signature 396 417 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 Pfam Sugar (and other) transporter 38 495 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 NCBIfam sugar porter family MFS transporter 24 490 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi3g0640 528 FunFam probable polyol transporter 4 27 498 - -
Vvi3g0640 528 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 32 503 IPR045262 GO:0015144
Vvi3g0640 528 ProSitePatterns Sugar transport proteins signature 1. 91 108 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0640 Vvi-Chr3 5487912 5489687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0640 2 527 Organic Solute Cotransporters AT3G18830 68.371 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0640 - - vvi:100852699 1012.29