Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0638 ATGAGGTCAATCAAAGATGGGTTTCGATTTCACGCCCACGCCATAAAAAACGGCATCACATCCACCGTCTTCACATCAAATCAACTCATTCATCTGTACTCCAAACACGGTTTTTTGGCAGAAGCCCATAAGTTGTTCGATGAAATGCCTGAGCGAAATGTTTTCACTTGGAATGCCATAATTTGGGCTTATATAAAAACCCAGAACTTGAAACAAGCGCGGGAGCTATTTGACTCTGCTCCAAGCAAAGATTTGGTGACTTACAATTCAATGTTATCGGGTTATATAAACACTGATGGATATGAGACTAATGCGCTTAAATTATTCATTGAAATGCAATCATTGAATGATGAAACTCGAATTGATGAGTTTTCTTTGACGAGGATGCTTAACTTGTCCGCAAAGTTATCCATGGAGTCTTATGGGAAGCAACTGCACTCATATATGGTGAAAACTGCAAACAATATAAGTGGGTTTGCTGTGAGCTCTCTTATTGACATGTATTCCAAGTGTGGGTGTTTCCGTGAAGTATGCCAAGTGTTTGATGGATGTGCTGGGGTGCTTGATTTGGTTTCAAAGAATGCAATGGTGGCAGCTTGTTGCAGAGAAGGTGAGTTGGAAATGGGCGTGAATTTATTTTGGAGAGACCTGGAGTTGAATGATGTGGTGTCTTGGAACACATTGATTTCAGGGTATGTTCAGAATGGTTGTGAGGAGGATGCACTGAAGTTGTTTGTTCATATGGAGGAGAATGAAGTGAGATGGAATGAGCACACTATCGCGGGTCTTTTGAGTGCTTGTGCTGGTTTAAGGAGTTTGAAGCTTGGGAAGGAAGTGCATGGTTGGGTTTTGAAATATGAGTTGGGTTTCAACCCATTCATAAGCAGTGGCCTTGTTGATGTCTATTGCAAGTGTGGTAATATGAAGTATGCAGAGTTAGTTTATGCGACAATTGGGACTGGGAATGCCTTTTCTATCACTTCAATGATTGTGGGGCATTCCTCTCAAGGCAACATGGGAGAAGCTCGGAGGCTTTTTGATTCTTTAACTGAGAAGAGTTCTATCATCTGGACAGCTTTGTTTACTGGGTATGTCAAATCACAGCAATGTGAAGCTGTGTTTGAACTTTTGAGTGAGTTCAGAGTGAAGGAAGCAATGGTTCCAGATGCTTTGATCCTCATCAGTGTACTGGGTGCATGTGCAATACAAGCTGCTCTTAATCCTGGAAAGCAGATTCATGCTTATGTTCTAAGAATTGGGATTGAACTAGATGAGAAGTTGGTCAGTGCTATGGTTGATATGTATTCAAAATCTGGGAATATAAAATATGCAGAAAAGATCTTCCAAAGAGTTACTAACAGAGATGCAGTCATTTACAATATAATGACAGCTGGGTATGCACACCATGGGCATGAGAATCAAGCTATCCAGCAATTTGAGGAAATGTTGGAGAGAGGTGTTAGACCTGATGCAGTCACCTTTGTTGCACTTCTATCAGCTTGCCGCCATTGTGGTTTAGTAGAACTAGGGGAGAAGTATTTTGCTTCCATGACAGATTACAATATATTGCCTGAAATTGATCACTATGCATGTATGATTGATTTGTATGGGAGGGCTAACCAACTAGAGAAGGCACAAGAGAGGCAGAAGAGAAGATATTGA 1662 0.4103 MRSIKDGFRFHAHAIKNGITSTVFTSNQLIHLYSKHGFLAEAHKLFDEMPERNVFTWNAIIWAYIKTQNLKQARELFDSAPSKDLVTYNSMLSGYINTDGYETNALKLFIEMQSLNDETRIDEFSLTRMLNLSAKLSMESYGKQLHSYMVKTANNISGFAVSSLIDMYSKCGCFREVCQVFDGCAGVLDLVSKNAMVAACCREGELEMGVNLFWRDLELNDVVSWNTLISGYVQNGCEEDALKLFVHMEENEVRWNEHTIAGLLSACAGLRSLKLGKEVHGWVLKYELGFNPFISSGLVDVYCKCGNMKYAELVYATIGTGNAFSITSMIVGHSSQGNMGEARRLFDSLTEKSSIIWTALFTGYVKSQQCEAVFELLSEFRVKEAMVPDALILISVLGACAIQAALNPGKQIHAYVLRIGIELDEKLVSAMVDMYSKSGNIKYAEKIFQRVTNRDAVIYNIMTAGYAHHGHENQAIQQFEEMLERGVRPDAVTFVALLSACRHCGLVELGEKYFASMTDYNILPEIDHYACMIDLYGRANQLEKAQERQKRRY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0638 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 84 119 IPR002885 -
Vvi3g0638 553 FunFam Uncharacterized protein 4 135 - -
Vvi3g0638 553 FunFam Uncharacterized protein 137 275 - -
Vvi3g0638 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 56 IPR002885 -
Vvi3g0638 553 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 65 IPR046960 GO:0003723|GO:0009451
Vvi3g0638 553 Pfam PPR repeat family 221 268 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat family 455 501 IPR002885 -
Vvi3g0638 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 490 524 IPR002885 -
Vvi3g0638 553 Gene3D Tetratricopeptide repeat domain 137 275 IPR011990 GO:0005515
Vvi3g0638 553 Gene3D Tetratricopeptide repeat domain 500 549 IPR011990 GO:0005515
Vvi3g0638 553 Gene3D Tetratricopeptide repeat domain 413 499 IPR011990 GO:0005515
Vvi3g0638 553 Gene3D Tetratricopeptide repeat domain 276 412 IPR011990 GO:0005515
Vvi3g0638 553 NCBIfam pentatricopeptide repeat 457 491 IPR002885 -
Vvi3g0638 553 NCBIfam pentatricopeptide repeat 27 53 IPR002885 -
Vvi3g0638 553 NCBIfam pentatricopeptide repeat 223 256 IPR002885 -
Vvi3g0638 553 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Vvi3g0638 553 FunFam Putative pentatricopeptide repeat-containing protein At3g18840 411 505 - -
Vvi3g0638 553 Pfam PPR repeat 55 79 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 86 115 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 327 352 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 356 381 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 161 182 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 429 451 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 192 213 IPR002885 -
Vvi3g0638 553 Pfam PPR repeat 25 54 IPR002885 -
Vvi3g0638 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vvi3g0638 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0638 Vvi-Chr3 5462377 5464132 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0638 51 547 Glycoside Hydrolase AT3G49170 29.341 1.71e-63 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0638 - - vvi:109121399 1099.73