Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0628 ATGAAATCGGGATCAAAGAAGCAATGGAACTCCATAGTACCTTTTCGGTTGAGGGGCAAATCAGCCACTCGCTTTTGCATGTACCCCAAAGTAAAGTCAGCTGGCCGTAGCCCAGGAAATACACCAGTTTATCTAAATGTGTATGACTTGACAGCCATCAATGGCTATGTCTACTGGGCAGGCCTTGGTGTCTTCCACTCTGGTGTGGAAGTTCATGGTGTAGAGTATGCCTTTGGAGCCCATGACTACCCAACAAGTGGTGTTTTTGAGGTTGAACCCCGGCAATGTCCTGGCTTCAAGTTTAGGAAGGCAATTTTCATGGGCACTACATGCTTGGACCCTGGTCAATTTAGAGAGTTCATGGAGCGTTACTCGGCGAATTACAATGGGGATACATATCACTTGATTATTAAGAACTGCAACCATTTCTGTGAGGATATCTGTAACAAGCTGACTGGGAACCGAATTCCAAAATGGGTCAATCGACTAGCAAGAATAGGTTCACTTTGCAACTGCATACTCCCTCAGGCCCTTAAGGCTTCTGCGGTGCGACACAAGCCCAATTTCCGAAACTACGAAATTGAAAAGAAGAAGCTGAGAACTGCCTTTAGTTGCTTGTCATCAATCTCAATGCATCAGAAGGAAGTATCGTTATCTTCATTATTTCTGCACTCTCACTACAAAGGCTGCCTACCGCCATGGGAGTTGAAAACATCAAAAAACAGCAGATTGAAAGAAGGAAAGCTTTTGAACTTCCATTTTACCTTTTCCTCTGTGCTGTACTATGTTTTTGGACTGGTGATTGTGGATTTGCTAGATTTATATTGTAATGTCATTGATCTTGATATGCTAAGTTACATTTTCATAGCAGAAGAAATGGATGGCTGCATTCTTCTCAAACCATCTTTGACCTATAACGGTTTTTATTTTTTATTTTTTAGTGGTCTGAATATTCTCTGCTTATGTATTTCAAACCCTGCAAACCCAGTTGAAGAGTACTCTCTCTAG 1008 0.4196 MKSGSKKQWNSIVPFRLRGKSATRFCMYPKVKSAGRSPGNTPVYLNVYDLTAINGYVYWAGLGVFHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKAIFMGTTCLDPGQFREFMERYSANYNGDTYHLIIKNCNHFCEDICNKLTGNRIPKWVNRLARIGSLCNCILPQALKASAVRHKPNFRNYEIEKKKLRTAFSCLSSISMHQKEVSLSSLFLHSHYKGCLPPWELKTSKNSRLKEGKLLNFHFTFSSVLYYVFGLVIVDLLDLYCNVIDLDMLSYIFIAEEMDGCILLKPSLTYNGFYFLFFSGLNILCLCISNPANPVEEYSL* 336
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0628 335 Pfam PPPDE putative peptidase domain 42 177 IPR008580 GO:0008233
Vvi3g0628 335 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
Vvi3g0628 335 PANTHER DESUMOYLATING ISOPEPTIDASE 39 220 IPR008580 GO:0008233
Vvi3g0628 335 Gene3D PPPDE domains 37 191 IPR042266 -
Vvi3g0628 335 SMART DUF862_2a 41 179 IPR008580 GO:0008233
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vvi3g0628 Vvi-Chr3 5419479 5421506 Dispersed/Wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0628 - K22763 vvi:100262358 525.013