Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0626 ATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAAATTGCGGAAAATGCCAATGGAAAAGCACCTGTCAAGAAGCAGAGTGCGGGAGAATTACGACTTCATAAAGATATCAGTGAACTGAATCTACCCAAAACTTGTTGCATATCATTTCCCAATGGCAAGGATGACCTGATGAGCTTTGAGGTTACCATTCGGCCTGATGAAGGATACTATTTAGGTGGTACATTCGTGTTCTCTTTCCAAGTTTCTCCCATCTATCCTCACGAGGCACCAAAAGTCAAGTGCAAGACAAAGGTCTACCATCCTAACATTGACTTGGAAGGAAACGTCTGCCTCAACATCCTAAGAGAGGACTGGAAACCTGTTCTTAATATAAACACTATAATTTATGGATTGTTTCATCTTTTCACGCAACCCAATTACGAAGATCCGCTCAATCATGATGCTGCTGCTGTGTTGAGGGATAACCCAAAGATGTTTGAATCGAATGTGAGAAGGGCGATGGCTGGTGGGTATGTGGGGCAGACCTTCTTCCCACGGTGCATGTAG 552 0.4312 MIKLFKVKEKQREIAENANGKAPVKKQSAGELRLHKDISELNLPKTCCISFPNGKDDLMSFEVTIRPDEGYYLGGTFVFSFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHDAAAVLRDNPKMFESNVRRAMAGGYVGQTFFPRCM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0626 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Vvi3g0626 183 SUPERFAMILY UBC-like 20 181 IPR016135 -
Vvi3g0626 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 57 161 - -
Vvi3g0626 183 CDD UBCc 33 167 IPR000608 -
Vvi3g0626 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Vvi3g0626 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
Vvi3g0626 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Vvi3g0626 183 SMART ubc_7 32 174 - -
Vvi3g0626 183 FunFam NEDD8-conjugating enzyme Ubc12 25 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0626 Vvi-Chr3 5406905 5409250 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0626 K10579 - vvi:100255479 384.03