Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0625 ATGTCTCGTTTCGTCGTCTTCCTCACGTTGATCGCACTTCTTCCGACGCTCTCATTTTCCTTCTCTCCCGAGAATCCCACGGATCGACGGATCCTCGTCTTGCTGGACGACATCTCTTTGAAATCATCTCACTCCCTCTTCTTCAAATCTCTCCAATCTCGCGGATTCGAGCTCGAGTTCAAGCTTGCTGACGATCCGAAGATCAGTTTGCAGAGATATGGACAGTATTTGTACGACGGATTGATTCTGTTTTCTCCAACAATCGAGCGATTTGGGGGATCTGTTGACTTGGCCGCAATTCTGGATTTTGTCGATTCGGGTCATGATTTGATCATGTCAGCTGATGTTTCCGCGTCTGATTTAATTCGGGAGATTGCAACGGAGTGTGGTGTTGAATTCGATGAGGATCCTGCAGCCATGGTTATTGATCACACCAGTTTTGCAGTCTCAGATACTGAAGGAGACCATACATTGATAGTCAGTGATGATTTTATAAAATCTGATGTGATTTTGGGGAAAGAGAAGATCGAGGCGCCTGTACTTTTTAGGGGGATTGGTCATTCAACAAATCCTGCCAATAGCTTGGTTTTGAAAGCTCTCTCAGCGTCTCCTGCCGCCTATTCGGCCAACCCAAAGTCTAAGTTGTCAAACCCTCCATCTCTCACTGGATCTGCGATCTCTTTAGTTTCAGTTGTGCAGGCAAGAAACAATGCTCGAGTCTTGATCTCAGGTTCATTAAGCATGTTTAGTAATAGATTGTTCAGATCTGGAGTACAAAAGGCTGGAAGCTCAACCAAACATGAGAAATCTGGAAACGAGCAGTTTTTGACTGAGCTTAGCAGATGGGTTTTCCATGAAAGAGGTCATCTCAAGGCTGTAAATGTTAGCCACCACAATGTCGGGGAAGCAGATGAACCTTCAATGTACAGGATCAAGGATGACCTGGAATATTCGGTTGAGATATATGAGTGGTCTGGAACAAGTTGGGAACCATATATTGCCGAAGATGTTCAAGTGCAATTTTATATGATGAGCCCCTATGTTTTGAAAACCTTATCAACCAACCAGAAGGGTCTATATTACACGGCGTTCAAGGTTCCTGATGTTTATGGCGTTTTCCAGTTCAAGGTTGAGTACCAGAGGCTTGGATACACAAGCTTGTCTCTATCAAAGCAGATTCCAGTTCGGCCTTTCAGACACAATGAATATGAAAGATTTATAACAGCTGCATTTCCCTATTATGGCTCATCATTTACTATGATGGCTGGTTTCTTTATCTTCTCCATCGTCTACCTATACAACAAGTAG 1308 0.4373 MSRFVVFLTLIALLPTLSFSFSPENPTDRRILVLLDDISLKSSHSLFFKSLQSRGFELEFKLADDPKISLQRYGQYLYDGLILFSPTIERFGGSVDLAAILDFVDSGHDLIMSADVSASDLIREIATECGVEFDEDPAAMVIDHTSFAVSDTEGDHTLIVSDDFIKSDVILGKEKIEAPVLFRGIGHSTNPANSLVLKALSASPAAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARVLISGSLSMFSNRLFRSGVQKAGSSTKHEKSGNEQFLTELSRWVFHERGHLKAVNVSHHNVGEADEPSMYRIKDDLEYSVEIYEWSGTSWEPYIAEDVQVQFYMMSPYVLKTLSTNQKGLYYTAFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPFRHNEYERFITAAFPYYGSSFTMMAGFFIFSIVYLYNK* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0625 435 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT 8 435 IPR005013 GO:0005789|GO:0018279
Vvi3g0625 435 Pfam Oligosaccharyltransferase 48 kDa subunit beta 30 435 IPR005013 GO:0005789|GO:0018279
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0625 Vvi-Chr3 5358080 5367189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0625 K12670 - vvi:100250299 851.662