Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0623 ATGGAAGTTTCCAGGCCCCTCAATCCAAATGATGTGTCAAAGCGCCATGCTTTAACTCCATTGAGGCTATTAAGGGGTTTGATATGTTTACTGGTGCTATTGTCAACAGCATTTATGATGTTAGTGTTCTGTGGCTTTTTGACTGCAGTAGTGTTTCGACCTTTTAGCAGACACTACAGCCGAACAGTAACATCCTTTTTCTTTGGTGCTTGGCTAGCTTTGTGGCCTTTCCTATTTGAAAAGATAAACAAAACAAAGGTGGTTTTTTCTGGTGAAACTGTTCCCAAAGGGGAGCGTGTTTTACTTATTGCAAACCATAGAACTGAGGTTGATTGGATGTATCTGTGGGACCTCGCATTGCGGAAGGGATGCCTTGGATGCATAAAGTACATCCTTAAGAGCAGCTTGATGAAATTGCCTGTATTTGGTTGGGGATTTCACATCATGGAGTTCATTCCAGTGGAGAGGAAATGGGAGATCGATGAACCACTTATGCACCAAATGCTTTCAACTTTCAGAGATCCTCGAGATCCCCTGTGGCTTGCTGTCTTTCCAGAAGGCACAGATTTCACTGAACAGAAGTGTATTCGAAGTCAAAAGTATGCAGCTGAAAAGGGCTTACCCATCCTAAAAAATGTGCTTCTTCCAAAAACAAAGGGTTTCTGTGCCTGCTTGGAAGATTTGAGGGGCTCCTTGGATGCAGTTTATGATTTAACCATTGGTTACAAGCATCAGTGCCCCTCTTTCTTGGATAATGTATTCGGTGTTGACCCTTCAGAAGTTCATATGCATGTTCGGCGCATCCCCTTAAACAACATTCCTACATCAGAAAATGAGGTTACTACTTGGTTGATGGATACATTCATTCTCAAAGACCAGTTGCTTTCTAATTTTTATTCTCAAGGCGGTTTTCCTCATCAAGGAACAGAAGGGACCCTCTCTACAATGAAATGCTTGGTGAATTTTGTTGCTGTAATTGGATTGACTGGCATATTTACTTTCTTCGCCCTTTTTTCATCCATCTGGTTTAAAATTTATGTATCCTTAGTCTGTGTGTATCTGGCTTCTGCTACCTATTTCAATCTTCGGCCATCGCCAATTTTGTCTTCGTAA 1113 0.416 MEVSRPLNPNDVSKRHALTPLRLLRGLICLLVLLSTAFMMLVFCGFLTAVVFRPFSRHYSRTVTSFFFGAWLALWPFLFEKINKTKVVFSGETVPKGERVLLIANHRTEVDWMYLWDLALRKGCLGCIKYILKSSLMKLPVFGWGFHIMEFIPVERKWEIDEPLMHQMLSTFRDPRDPLWLAVFPEGTDFTEQKCIRSQKYAAEKGLPILKNVLLPKTKGFCACLEDLRGSLDAVYDLTIGYKHQCPSFLDNVFGVDPSEVHMHVRRIPLNNIPTSENEVTTWLMDTFILKDQLLSNFYSQGGFPHQGTEGTLSTMKCLVNFVAVIGLTGIFTFFALFSSIWFKIYVSLVCVYLASATYFNLRPSPILSS* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0623 370 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 18 355 - -
Vvi3g0623 370 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 30 246 - -
Vvi3g0623 370 Pfam Acyltransferase C-terminus 254 323 IPR032098 -
Vvi3g0623 370 Pfam Acyltransferase 89 243 IPR002123 GO:0016746
Vvi3g0623 370 CDD LPLAT_LCLAT1-like 76 266 - -
Vvi3g0623 370 SMART plsc_2 100 222 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0623 Vvi-Chr3 5350863 5352411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0623 1 366 Miscellaneous Gene Families AT1G75020 63.115 2.06e-171 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0623 K13513 - vvi:100248731 748.814