Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0621 ATGGAGATCGATTCTGCAGAATATCAACTGAGCTGCGAACTTCGAGGACACGAAGATGACGTTCGTGGTATATGTATATGTGGCAATGCTGGAATTGCGACTTCATCGAGGGACAGGACTGTTAGGTTTTGGACTTTGGATCCATCAGATAAGCGCAATTATACTGCTTGGAAAATATTGTTAGGGCACACTAGTTTTGTGGGCCCATTGGCTTGGATTGCGCCCAATGAGGAGTTTCCGGAAGGTGGGATCGTATCGGGTGGGATGGACACTCTTGTTATGGTTTGGGATTTGAAAACTGGAGAGAGAATCCACACATTGAAAGGTCATCAATTGCAAGTCACTGGTGTTGCATTGGATGATTCGGACGTTGTGTCATCATCTGTTGATTGTACTTTAAGGCGGTGGAGGAAAGGGAAGGCTGTTGAATTTTGGGAGGCTCATAAGGCAGCAATCCAAGCTGTTATAAAACTGCCTTCGAATGAGCTTATTACAGGTTCAAGTGACACAACATTGAAGCTTTGGAGAGGACAAAATTGTATACAGACTTTTGTTGGACATACAGATACTGTTCGAGGCTTGGCAGTGATGCCTGATTTGGGAGTACTTTCTGCCTCACATGATGGTTCCATCAGGTTGTGGGCACTAACTGGTGAAACATTAATGGAGATGGTGGGTCACACTTCTATTGTCTATTCTGTTGATTCACATGCATCTGGACTCATTGTCAGTGGCAGTGAAGATTGTTTTGCAAAGATCTGGAAAGATGGAGTTTGTGTTCAAAGCATAGAGCATCCTGGTTGTGTTTGGGATACCAAATTCTTGGAAAATGGGGATGTTGTAACTGCATGTTCTGATGGGGTTGTACGTATTTGGACAGTTCAGCAGGATAGAATTGCCAATTCTGTAGAACTTGAATCATATTTTTCCAGACTTTCTCAATTCAAGATCAGCAGGAAAAGAGTTGGTGGATTGAAATTGGAAGACTTACCAGGGCTAGAAGCTTTACAGATTCCAGGGACTAGTGATGGCCAGACTATAGTTGTCAGAGAAGGGGACAATGGCATGGCATATTCTTGGAATTTGAGAGAACAGAAGTGGGATAAGATTGGAGAAGTTGTTGATGGACCTGATGATACCATGGCGCGTCCTGTTCTTGATGGAATACAATATGATTATGTATTTGATGTTGATATTGGAGATGGAGAGCCTATCCGTAAATTGCCCTACAATCGATCAGATAACCCTTATTCTACTGCTGACAAGTGGCTTCTCAAGGAGAACCTTCCACTTTCCTATCGCCAACAAGTTGTTGAGTTTATACTGCAAAATTCTGGACAAAAGAATTTTGCTTTGGACACATCATATCGCGATCCCTACACTGGTGCTAATGCTTATGTGCCTGGAGAATCTTCCAACAAGTCTGCTGTTCCAGTGAAACCTTCTTTCAAGCATATTCCTAAGAAAGGAATTCTTGTCTTTGATGCAGCTCAGTTTGATGGGATTCTCAAAAAGATTTCAGAGTTTAACAATGCTCTAATATCTGACCCGGAGAAGAAGAGCTTGTCGCTCACTGAGGTTGAGATTTCCAGACTGGTTGCTGTTGTTAAAATTTTGAAGGAAACATCACGTTATCATTCCAGTACTTTTGCAGATGTTGACATTGCTTTGATGCTGAAATTGCTAAAGTCATGGCCAATTGCAATGATTTTTCCAGTTATTGATATTCTGAGGATGATCATCCTGCATCCAGATGGGGCCATTAGACTTCTCAAGCTTCTTGAAGATGAAAACGATGTACTAATGGACATGATCAAGAAAATTACAGTAAGTCCTGCACTTGCAGCGAATCTTTTAACCAGCATCCGTGCTGTGTGTAATCTCTTCAAGAATTCATGCTACAGCAACTGGTTACTGAATCATCGCAGTGAGATTCTTGATGCATTCTCAAGTTGTAATTCATCTTCAAATAAGAATGTACTGCTGTCTTATTCTACCTTGCTACTCAATTATGCTGTGTTCTTAATTGAAAAGAAGGATCAAGAAGGCCAATCTCATGTGCTTTCAGCAGTTCTTGAGATTGCAGAAGGGGAAAATCTGGATGTTGATTCAAAATACCGAGCGTTAGTTGCCATTGGAACACTGATGCTTGAAGGTTCTGTGAAAAAGATAGCATTGGACTTTGATGTTGAGAGTATTGCCAAAGCAGCAAAGGTTTCTAAAGACGCAAAGGTTGCTGAAGTTGGAGCTGACATTGAACTCTTAACGAAACAGAATTGA 2280 0.4145 MEIDSAEYQLSCELRGHEDDVRGICICGNAGIATSSRDRTVRFWTLDPSDKRNYTAWKILLGHTSFVGPLAWIAPNEEFPEGGIVSGGMDTLVMVWDLKTGERIHTLKGHQLQVTGVALDDSDVVSSSVDCTLRRWRKGKAVEFWEAHKAAIQAVIKLPSNELITGSSDTTLKLWRGQNCIQTFVGHTDTVRGLAVMPDLGVLSASHDGSIRLWALTGETLMEMVGHTSIVYSVDSHASGLIVSGSEDCFAKIWKDGVCVQSIEHPGCVWDTKFLENGDVVTACSDGVVRIWTVQQDRIANSVELESYFSRLSQFKISRKRVGGLKLEDLPGLEALQIPGTSDGQTIVVREGDNGMAYSWNLREQKWDKIGEVVDGPDDTMARPVLDGIQYDYVFDVDIGDGEPIRKLPYNRSDNPYSTADKWLLKENLPLSYRQQVVEFILQNSGQKNFALDTSYRDPYTGANAYVPGESSNKSAVPVKPSFKHIPKKGILVFDAAQFDGILKKISEFNNALISDPEKKSLSLTEVEISRLVAVVKILKETSRYHSSTFADVDIALMLKLLKSWPIAMIFPVIDILRMIILHPDGAIRLLKLLEDENDVLMDMIKKITVSPALAANLLTSIRAVCNLFKNSCYSNWLLNHRSEILDAFSSCNSSSNKNVLLSYSTLLLNYAVFLIEKKDQEGQSHVLSAVLEIAEGENLDVDSKYRALVAIGTLMLEGSVKKIALDFDVESIAKAAKVSKDAKVAEVGADIELLTKQN* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0621 759 CDD WD40 10 292 - -
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 106 IPR001680 GO:0005515
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 14 54 IPR001680 GO:0005515
Vvi3g0621 759 FunFam Polyubiquitin binding protein (Doa1/Ufd3) 4 312 - -
Vvi3g0621 759 ProSiteProfiles PFU domain profile. 359 455 IPR015155 -
Vvi3g0621 759 Gene3D - 378 453 IPR038122 -
Vvi3g0621 759 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Vvi3g0621 759 Pfam WD domain, G-beta repeat 10 44 IPR001680 GO:0005515
Vvi3g0621 759 Pfam WD domain, G-beta repeat 258 292 IPR001680 GO:0005515
Vvi3g0621 759 Pfam WD domain, G-beta repeat 102 136 IPR001680 GO:0005515
Vvi3g0621 759 Pfam WD domain, G-beta repeat 219 255 IPR001680 GO:0005515
Vvi3g0621 759 FunFam Transducin family protein / WD-40 repeat family protein 379 453 - -
Vvi3g0621 759 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vvi3g0621 759 PRINTS G protein beta WD-40 repeat signature 84 98 IPR020472 -
Vvi3g0621 759 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Vvi3g0621 759 ProSitePatterns Trp-Asp (WD) repeats signature. 84 98 IPR019775 -
Vvi3g0621 759 ProSiteProfiles PUL domain profile. 484 755 IPR013535 -
Vvi3g0621 759 FunFam Phospholipase A-2-activating protein isoform A 484 756 - -
Vvi3g0621 759 Pfam PUL domain 486 751 IPR013535 -
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 175 IPR001680 GO:0005515
Vvi3g0621 759 Gene3D - 484 755 IPR011989 -
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 224 IPR001680 GO:0005515
Vvi3g0621 759 Pfam PFU (PLAA family ubiquitin binding) 339 448 IPR015155 -
Vvi3g0621 759 SUPERFAMILY WD40 repeat-like 7 308 IPR036322 GO:0005515
Vvi3g0621 759 SMART WD40_4 7 45 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 256 293 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 138 176 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 53 97 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 100 137 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 217 255 IPR001680 GO:0005515
Vvi3g0621 759 SMART WD40_4 177 215 IPR001680 GO:0005515
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 214 - -
Vvi3g0621 759 PANTHER PHOSPHOLIPASE A-2-ACTIVATING PROTEIN 6 713 - -
Vvi3g0621 759 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 255 IPR001680 GO:0005515
Vvi3g0621 759 Gene3D - 4 311 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0621 1 758 Acyl Lipid Metabolism Gene Families AT3G18860 69.921 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0621 K14018 - vvi:100243593 1499.95