Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0618 ATGGCGATGTCTCTGCAACTCTGCCGCTTCTCCACCTTCTCCGACCGCTCCCTTCCGGAGGCCTTCGCCGGAATCGGAGTGTTCCGGCGCCGGAAGCCTCTCTCCGTTCGGTGCTCAGGCGAGTCCGAGTCTTCTTCTTCCTCGTCTGTGGCTGTTGATTCCGATTTTGATGCGAAGGTGTTTCGGCACAACTTGACGAGGAGTAAAAATTATAATCGGAAAGGATTTGGACACAAGGATGAGACTCTGGAGCTCATGAATCGCGAGTATACTAGTGACATCATAAAGACATTGAAGGAAAATGGAAATGAGTATAAATGGGGAAATGTTACAGTGAAACTGGCAGAAGCCTATGGATTTTGCTGGGGTGTGGAGCGTGCTGTCCAAATTGCTTATGAAGCCAGAAAACAATTTCCTGAGGAGAAAATTTGGATTACGAATGAAATTATTCACAACCCTACTGTTAACCAGCGATTGGCAGAGATGGAAGTCAAAGATATTCCCATTGATGATGGCCAGAAACAATTTGAAGTTGTTGATAAGGGTGATGTTGTGATTTTGCCTGCTTTTGGAGCTGCAGTGGATGAGATGTTGACTTTGAGCAACAAAAATGTACAAATTGTTGATACAACTTGCCCATGGGTTTCTAAGGTTTGGAATATTGTTGAGAAGCACAAGAAGGGAGAGTACACTTCAATCATTCATGGTAAATATTCTCATGAGGAGACTATTGCAACTGCATCTTTTGCAGGGAAGTATATCATTGTGAAGAATATGGCAGAGGCAATGTATGTATGTGATTACATTCTTGGAGGAGAACTTGATGGATCTAGCTCAACCAGAGAGGAGTTTTTTGAGAAATTTAAATTTGCCATCTCTGAGGGGTTTGATCCAGACATTGACTTGTCCAAAGTTGGTATTGCAAATCAAACCACAATGCTCAAGGGAGAAACTGAAGAAATTGGGAAATTAGTAGAGAGGACTATGATGCGAAAATATGGGGTTGAAAATGTCAATAATCACTTCATAAGCTTCAACACAATTTGTGATGCTACTCAAGAGCGACAAGATGCAATGTATAAGCTGGTGGAGGAGAAACTGGACGTTATGTTAGTAGTTGGTGGGTGGAACTCCAGCAACACCTCACATCTACAAGAGATTGCGGAGGACCGTGGAATCCCCTCGTATTGGATTGACAGTGAGAAGAGAATAGGTCCAGGAAACAGAATAAGTCATAAGTTGATGCATGGGGAGCTGGTTGAGAAAGAAAACTGGCTACCAGAGGGTCCTATTACGATAGGTGTTACATCTGGTGCCTCTACCCCAGATAAGGTTGTTGAAGATGTTCTCATCAAGGTATTCGACATTAAACGGGAAGAAGCCTTGCAACTGGCATAA 1398 0.4328 MAMSLQLCRFSTFSDRSLPEAFAGIGVFRRRKPLSVRCSGESESSSSSSVAVDSDFDAKVFRHNLTRSKNYNRKGFGHKDETLELMNREYTSDIIKTLKENGNEYKWGNVTVKLAEAYGFCWGVERAVQIAYEARKQFPEEKIWITNEIIHNPTVNQRLAEMEVKDIPIDDGQKQFEVVDKGDVVILPAFGAAVDEMLTLSNKNVQIVDTTCPWVSKVWNIVEKHKKGEYTSIIHGKYSHEETIATASFAGKYIIVKNMAEAMYVCDYILGGELDGSSSTREEFFEKFKFAISEGFDPDIDLSKVGIANQTTMLKGETEEIGKLVERTMMRKYGVENVNNHFISFNTICDATQERQDAMYKLVEEKLDVMLVVGGWNSSNTSHLQEIAEDRGIPSYWIDSEKRIGPGNRISHKLMHGELVEKENWLPEGPITIGVTSGASTPDKVVEDVLIKVFDIKREEALQLA* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0618 465 CDD lytB_ispH 112 450 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vvi3g0618 465 Hamap 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 110 457 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vvi3g0618 465 Gene3D - 212 345 - -
Vvi3g0618 465 Gene3D - 121 211 - -
Vvi3g0618 465 Gene3D - 346 464 - -
Vvi3g0618 465 PANTHER 4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE, CHLOROPLASTIC 1 463 - -
Vvi3g0618 465 NCBIfam 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 112 452 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
Vvi3g0618 465 Pfam LytB protein 112 451 IPR003451 GO:0019288|GO:0046872|GO:0050992|GO:0051745
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0618 K03527 - vvi:100267479 916.761