Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0617 ATGGAGCTTCGATCCCTGCAATCACCCACTGTCACCAGCATACCCAAACTCAATAGAAGTGGTGGGTTCATTGAAAAACCCTTTTTATGCGGTCAGGTCCTCAGGTTACCTAGTTCTAGGAGGTGCCCAGATTCTAGAAAGCTCACAGTTCTTGAATTTAGAGCTCAAGCCACAGGTACTACTAAATTCAGCTTCAGTACAATTGGGGCAATTCAAGACAAAGCTGATTTGAAAGATGAGGATCTTGCATTTGTAGCTGGTGCTACTGGTAGAGTAGGCTCACGAACTGTAAGGGAGCTTCTGAAACTTGGATTCAGAGTCAGAGCTGGTGTTAGAACTGCTCAGAAAGCAGAAGCCCTTATTCAAAGTGTCAAACAAATGAAGCTTGATGTTGAAAGTGCAAGTGAAGGAACTCAACCTGTAGAAAAGCTTGAAATTGTGGAGTGTGACTTGGAGAAAAGAGATCAGATTGGACCAGCACTGGGCAATGCTTCAGTGGTTATATGCTGCATTGGTGCCAGCGAGAAAGAGGTTTTTGATATTACAGGACCTTATCGGATTGACTATATGGCAACCAAAAACTTAATTGATGCAGCAACTGTTGCAAAAGTGAACCATTTTATTTTGCTTACATCTTTGGGAACAAACAAAGTTGGATTTCCTGCGGCCATCCTAAATTTGTTTTGGGGAGTCCTGATTTGGAAAAGGAAGGCAGAAGAAGCATTGTTTGCCAGTGGTCTTCCGTACACTATAGTGAGACCTGGAGGAATGGAGCGGCCAACTGATGCTTATAAAGAAACCCATAATATTACCCTTTCACAAGAAGACACTTTATTTGGTGGCCAAGTGTCCAACCTTCAGGTAGCAGAACTCATTGCATTTATGGCCAAAAATCGTGGTTCTTCATACTGTAAAGTGGTGGAAGTAATTGCAGAGACAACTGCACCCTTGACTCCCTTCGGTGAGCTTCTTGCAAAAATACCCTCTCAACGTGTCGATGTTTCACCAAAGGAATCAGATGCTGCAGATGGGCCTGCTCCTGTACCTGTTGTATCTGGTCCCCCTCCTAGCACTCCTATTGAGAAGGGACCTCCCCAAGGAAAAGCAACGGCAATGAGCCCATTGTCTCCTTATATTGTCTATGAAGATCTGAAGCCACCAACCTCTCCTACTCCCACCCCAAGCACCAGTTCTAGCACTGCCAGAGCACCTGATGTAGATGGAATTCCAGCAGAACCAAAGTCCATTCCCTCTGTTCTAGAACCCTTGAGCACTGTCCTTGCAAAAGAAGCTATCCAGGAAGAAGCAAAGAAAACAAGGCCTCTCTCGCCTTACATTGTCTACGACGACTTGAAGCCCCCTACATCACCATCTCCTAGTGCACCAACTGTATCACTCCCCTCAACACTTCCCATGGAAGGTGGGTCCAAGATAGATAACATCTCAGGCAACAACACAGCTCAGCCTCCAGCTGCAGATATACCAAAGGATGAACAGCATCACGTACAAGCAAAACCAAGGCCCCTTTCACCTTTTACCATGTATGAGGACTTAAAGCCTCCCACATCGCCATCCCCCAGCCAATGTTAA 1590 0.4553 MELRSLQSPTVTSIPKLNRSGGFIEKPFLCGQVLRLPSSRRCPDSRKLTVLEFRAQATGTTKFSFSTIGAIQDKADLKDEDLAFVAGATGRVGSRTVRELLKLGFRVRAGVRTAQKAEALIQSVKQMKLDVESASEGTQPVEKLEIVECDLEKRDQIGPALGNASVVICCIGASEKEVFDITGPYRIDYMATKNLIDAATVAKVNHFILLTSLGTNKVGFPAAILNLFWGVLIWKRKAEEALFASGLPYTIVRPGGMERPTDAYKETHNITLSQEDTLFGGQVSNLQVAELIAFMAKNRGSSYCKVVEVIAETTAPLTPFGELLAKIPSQRVDVSPKESDAADGPAPVPVVSGPPPSTPIEKGPPQGKATAMSPLSPYIVYEDLKPPTSPTPTPSTSSSTARAPDVDGIPAEPKSIPSVLEPLSTVLAKEAIQEEAKKTRPLSPYIVYDDLKPPTSPSPSAPTVSLPSTLPMEGGSKIDNISGNNTAQPPAADIPKDEQHHVQAKPRPLSPFTMYEDLKPPTSPSPSQC* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0617 529 CDD SDR_a5 84 313 - -
Vvi3g0617 529 MobiDBLite consensus disorder prediction 334 420 - -
Vvi3g0617 529 MobiDBLite consensus disorder prediction 433 529 - -
Vvi3g0617 529 Pfam NAD(P)H-binding 87 298 IPR016040 -
Vvi3g0617 529 FunFam Protein TIC 62, chloroplastic 79 330 - -
Vvi3g0617 529 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 328 IPR036291 -
Vvi3g0617 529 MobiDBLite consensus disorder prediction 348 362 - -
Vvi3g0617 529 Gene3D - 81 330 - -
Vvi3g0617 529 PANTHER PROTEIN TIC 62, CHLOROPLASTIC 1 464 IPR044719 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0617 Vvi-Chr3 5292443 5302103 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0617 - - vvi:100262319 978.008