Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0612 ATGTTGAACACCAAGACTCCTGCTACAACTGCTACCATGTTAATCTCTAATGCAACCCAGGATGCCAAGAATATCTCCAAGATTTGTGCTACACACGGATCTGGGTCAACATCATTATATCGCCAATCCCTGGAGCTGTCATGGGTCAGGAGAGATGGATCAGTACAAGGCCTTTTTTGTAGAACTCCAAGATTAATTACAAGTGTGGAGAAGTGTAGAAGATTGGAAGTGAGGGCTTTTACAGAAGAACAGGAAGCTCTGGTGGTCAAATCATGGAGTTCAATGAAGAAGAATGCTGGAGAATTGAGTTTGAAATTCTTTTTAAGGATCTTTGAGATTGCACCATCAGCAAAGAAGCTATTCTCATTCTTGAGAGATTCAGATGTTCCCCCGGAGCAGAACCCAAAGCTCAAACCTCATGCTTTGTCTGTCTTTGTTATGACCTGTGAATCAGCAATACAACTTCGGAAGGCTGGCAGAGTCACTGTGAGAGAATCAAATTTGATTGATTTGGGTGCTACACACTTCAAATATGGTGTTGTTGATGAACATTTTGAGGTGACAACATAA 570 0.4158 MLNTKTPATTATMLISNATQDAKNISKICATHGSGSTSLYRQSLELSWVRRDGSVQGLFCRTPRLITSVEKCRRLEVRAFTEEQEALVVKSWSSMKKNAGELSLKFFLRIFEIAPSAKKLFSFLRDSDVPPEQNPKLKPHALSVFVMTCESAIQLRKAGRVTVRESNLIDLGATHFKYGVVDEHFEVTT* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0612 189 Pfam Globin 105 187 IPR000971 GO:0020037
Vvi3g0612 189 Gene3D Globins 78 189 IPR012292 GO:0019825|GO:0020037
Vvi3g0612 189 PRINTS Plant globin signature 134 162 - -
Vvi3g0612 189 PRINTS Plant globin signature 81 98 - -
Vvi3g0612 189 PRINTS Plant globin signature 106 126 - -
Vvi3g0612 189 ProSiteProfiles Globin family profile. 79 187 IPR000971 GO:0020037
Vvi3g0612 189 ProSitePatterns Plant hemoglobins signature. 134 145 IPR019824 GO:0019825|GO:0020037
Vvi3g0612 189 SUPERFAMILY Globin-like 76 187 IPR009050 -
Vvi3g0612 189 PANTHER LEGHEMOGLOBIN-RELATED 77 188 IPR001032 GO:0019825|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0612 Vvi-Chr3 5262082 5263561 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0612 - - vri:117911305 362.844