Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0607 ATGGCGGTTTCTAAGGTTAAGCAAATTTTATTCACACCCCTAGCCCGTAAAACCCTTTGTCTCTCCTTGTCTTCCTTGCCATCCGATCAAAACCCTACCAAAACCCTAATTTCAACGGCCGTTTCAATTCTCCGACACCAACGTTCAAAGTCCCGGTGGAGCCATCTCCAATCTCTGTTCCCGAAAGGCTTCACCCCCACCGAAGCTTCCCAAATTGTTCTCCAAATAAAAAACAATCCACATCTTGCTCTCTCCTTTTTCCTCTGGTGTCATCACAAGTCCCTCTGCAACCACACCCTCCTCTCCTACTCCACCATCATTCACATTCTTGCTAGAGCTCGCCTCAAGTCCCAAGCTTTAGGCCTAATCCGGACAGCAATTCGGGTTTTTGATGATTCGGATGAATGCTCATCACAGCCTCCGAAAATATTTGAATCGCTTGTCAAGACGTATAATTCGTGTGGGTCAGCTCCATTTGTGTTTGATTTGTTGATTAAAGCATGTTTGAATTCGAAAAGGATTGAACAGTCGATTTCTATTGTTAAAATGCTTAGGTCTCGGGGAATTAGCCCGACAATTAGTACATGTAATGCTCTGATTTGGCAGGTTTCACGGGGTCGGGGTTGTGATGCAGGTTATGAGATTTATAGGGAGGTTTTCGGGTCTTGGGATGATGAAATCAATGAAAAGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTTGCCCAAATGTGCATACATTCAATGCATTGATGGTTTGTTTTTACCGGGATGGTGGGGTGGAGAAGGTGGAGGAGATTTGGGCTGAAATGGGGGAATGGGATTGTAATCCAAATGCCTATAGCTATAGTGTTCTAATGGCAGCATTTTGTGATGAAGGGAGGATGGGAGAGGTTGAGAAGTTATGGGAAGAAATGCGAATGAAGAAAATGGAGCATGATATCATGGCGTATAACACAATAATCGGTGGGTTTTGTAGAATTGGGGAGATTGAGAGGGGAGAAGAGCTTTTCAGAGAAATGGAATTGAGTGGGATTCAGAGTACTTGTGTTACTTACGAGCATCTTATTAATGGGTATTGTGAAATTGGAGATGTTGATTCAGCAGTTCTTTTGTACAAGGATATGTGCAGGAAAGGTTTCAGGGCAGAGGCAAGAACTGTTGATGGGATGATTCTCTTACTTTGTAACAATAGGAGGGTTCATGAAGCTTTGAAGTTATTGAGGGTTGCAATGGGAAATGTTGAATTTGCGCCAAGGGGGAAGAGTTATGAGACTCTGATAAAGGGTTTTTGCGAAGAGGGGAAGATGGAAGAAGCATCGAAACTTCAATCAGAGATGGTGGGGAAAGGGTTCAAACCGACTCTTGAGATTTATAGTGCTTTTATTGATGGTTATATGAAACAAGGGAACAAGGAAATTGCAGAAACCTTAAGGAAGGAAATGTTCGAAACTCAAATGCAGCAGGAAGAGAATTAG 1479 0.4307 MAVSKVKQILFTPLARKTLCLSLSSLPSDQNPTKTLISTAVSILRHQRSKSRWSHLQSLFPKGFTPTEASQIVLQIKNNPHLALSFFLWCHHKSLCNHTLLSYSTIIHILARARLKSQALGLIRTAIRVFDDSDECSSQPPKIFESLVKTYNSCGSAPFVFDLLIKACLNSKRIEQSISIVKMLRSRGISPTISTCNALIWQVSRGRGCDAGYEIYREVFGSWDDEINEKVRVRVRVRVRVCPNVHTFNALMVCFYRDGGVEKVEEIWAEMGEWDCNPNAYSYSVLMAAFCDEGRMGEVEKLWEEMRMKKMEHDIMAYNTIIGGFCRIGEIERGEELFREMELSGIQSTCVTYEHLINGYCEIGDVDSAVLLYKDMCRKGFRAEARTVDGMILLLCNNRRVHEALKLLRVAMGNVEFAPRGKSYETLIKGFCEEGKMEEASKLQSEMVGKGFKPTLEIYSAFIDGYMKQGNKEIAETLRKEMFETQMQQEEN* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Vvi3g0607 492 Gene3D Tetratricopeptide repeat domain 390 491 IPR011990 GO:0005515
Vvi3g0607 492 Pfam PPR repeat family 243 291 IPR002885 -
Vvi3g0607 492 Pfam PPR repeat family 351 397 IPR002885 -
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Vvi3g0607 492 Pfam PPR repeat 314 342 IPR002885 -
Vvi3g0607 492 Pfam PPR repeat 423 448 IPR002885 -
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Vvi3g0607 492 Gene3D Tetratricopeptide repeat domain 37 220 IPR011990 GO:0005515
Vvi3g0607 492 Gene3D Tetratricopeptide repeat domain 309 379 IPR011990 GO:0005515
Vvi3g0607 492 Gene3D Tetratricopeptide repeat domain 221 308 IPR011990 GO:0005515
Vvi3g0607 492 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 64 409 - -
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Vvi3g0607 492 Pfam PPR repeat 458 483 IPR002885 -
Vvi3g0607 492 NCBIfam pentatricopeptide repeat 423 455 IPR002885 -
Vvi3g0607 492 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Vvi3g0607 492 NCBIfam pentatricopeptide repeat 317 347 IPR002885 -
Vvi3g0607 492 NCBIfam pentatricopeptide repeat 351 382 IPR002885 -
Vvi3g0607 492 NCBIfam pentatricopeptide repeat 246 280 IPR002885 -
Vvi3g0607 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0607 238 491 Miscellaneous Gene Families AT4G11690 27.165 9.14e-30 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0607 - - vvi:100267626 985.326