Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0606 ATGGATGAAGTACCTGGCTCGGTGGGGACCAGTGCTAGCTTCTCTTTGAGATTGGGCCAGACCATATTCTCTTCTGCTTCTCTTCTTTTCATGTCTTTGGGGGTTGAGTTCTATAGCTACACAGCTTTCTGCTATTTGGTTACAATCATGGGTTTGGTTATTCCTTGGAGTTTCACTTTGGCACTGGTGGATGGATACTCTGTCCTGGTTAAATGCCCTCTCCGCCAGCCAGGAATACTGCTGATCATTGTCCTAGGAGATTGGGTCTTATCAATTCTCACACTTGCTGCAGCTTCCTCAACACTTGGTGTGGTCGACGTCCTGCTCAAATCTGATGCCTCCTACTACCCTATAAAGTTTTGCAGTAGATATCAGATATCCGCAGCTATGGCCTTCTTGTCCTGGTTTCTGTCTTTTGGTTCATTTCTTTTCAATCTTTGGTTGCTCCCCACATTGTGA 459 0.4575 MDEVPGSVGTSASFSLRLGQTIFSSASLLFMSLGVEFYSYTAFCYLVTIMGLVIPWSFTLALVDGYSVLVKCPLRQPGILLIIVLGDWVLSILTLAAASSTLGVVDVLLKSDASYYPIKFCSRYQISAAMAFLSWFLSFGSFLFNLWLLPTL* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0606 152 Pfam Casparian strip membrane protein domain 9 137 IPR006702 -
Vvi3g0606 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0606 Vvi-Chr3 5229551 5231664 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0606 - - vvi:100258936 283.493