Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0603 ATGGCGGTTTACACGGTGAAGGTCGCAGATTCGATCCCGGCGACGGAGGAAAGGCCATCCGCAGGGCCTGTTTATAGATGCATTTATGCAGAGAATGGCCTGTTGGAGGTGCCAAAGGGAATGGAGTCTCCATGGGAGTTCTTTAGTGATTCCGTCGAGAGAAATCCCAAAAACCAGATGCTGGGTAGGCGCCAAATCATCAATTCCAAGGCGGGTCCATACGTTTGGCTCACGTATCGGGAAGCCTACGATGCTGCTCTCCGAATGGGTTCCGCAATGCGAAGCCGCGGTGTCAATCCTGGAGACAGGTGTGGGATTTATGGATCCAACTGCCCCGAATGGATAATTGCTATGGAGGCTTGTAACAGCCAGGCCATTCCCTATGTCCCACTATATGACTCCCTTGGTGCTAATGCTGTGGAGTTCATCATCAACCATGCTGAAGTTTCAATAGCTTTTGTTCAAGAAAGCAAGATACCAGCTATGCTGACATGCCTCCCTAAGTGTACCTCATATCTGAAGACCATCATCAGCTTTGGGAAGATTTCCAGTTCACAAAAGGAGGAAGCTGAAGAGCTGGGGGTATCTTGCTTTTCTTGGGAAGAATTTGCTCTATTGGGAAGTTTGGATTGTGAACTTCCTCCAAAACAGAAGACAGACATCTGCACGATAATGTACACCAGTGGAACAACTGGAGAACCAAAAGGAGTTGTTTTATCCAACGAGGCTATCATGGCAGAAGTTCTGTCCACGGACCAGCTACTTTTAGAGACAGACAAAGTGGCTACAGAAGAGGATACATACTTCTCATTCCTTCCTCTGGCCCATGTATTTGATCAGATAATGGAAACATATTGTATCTACAAGGGATCCTCAATAGGATTTTGGGGAGCCGATGTGAGATATTTAATGGAGGACATTCAGGAACTGAAGCCAACTATATTTTGTGGGGTTCCTAGAGTTTATGAACGTATATATGGAGGTGCGATTGCTAAAATTTCATCAGGAGGTGCATTGAGAAAGGCATTGTTCCAATATGCATACAATTACAAATTGAGGAATCTGGAGAAGGGCCTGCGGCAAGATGAAGCAGCGCCTCGCTTGGACAGGCTTATATTTGATAAGATTAAACAAGGATTTGGTGGACGAGTTCGTCTCTTGTTTTCTGGAGCTGCTCCTTTGTCTAGGCATGTGGAGGAATTTTTGAGGGTCACCAGCTGTTCTGTCTTATCACAAGGATATGGCCTTACTGAAAGCTGTGGTGGATGTTTGACATCCATAGTTAATGAGTTCTCTATGATGGGAACTGTTGGAGTCCCCTACCCAACCATTGAAGCAAGGCTTGAGTCAGTTCCAGAGATGGGATATGATGCACTTTCCAATGTACCACGTGGAGAAATTTGTCTGAGGGGAAAGACTTTGTTCTCTGGTTACTTCAAGCGGCAAGATCTTACAGAAAGTGCTCTGGTGGATGGGTGGTTCCATACAGGTGATATTGGAGAATGGCAGCCCAATGGAGCAATGAAAATTATTGACAGGAAAAAGAACATCTTTAAGCTCTCTCAAGGGGAATATGTTGCTGTGGAGAATCTTGAAAACACATATTCAAGATGCCCGCTTATAACATCGATTTGGGTCTATGGGAACAGTTTTGAGTCTTTCCTTGTTGCTGTGGTGGTCCCGGATAAAAAGGCACTTGAGGATTGGGCAGAAAACCATAATGTGACTGGAGATTTTAAATCTTTGTGTGAAAACTTGGAGGCAAGGAAATACATTTTAGATGAGCTCAATAACACCGGTCAGAATCACCAACTTAAAGGTTTTGAGAGGTTAAAAGCAGTTCATTTGGACCCAAATCCATTTGACATAGAGCGGGACCTGGTAACTCCAACTTTTAAACTGAAGAGGCCACAGTTGCTCAAGTACTACAAGGACATCATCGATCGACTATACAGTGAAGCAAAGGGAACAAAGTCATGA 1980 0.447 MAVYTVKVADSIPATEERPSAGPVYRCIYAENGLLEVPKGMESPWEFFSDSVERNPKNQMLGRRQIINSKAGPYVWLTYREAYDAALRMGSAMRSRGVNPGDRCGIYGSNCPEWIIAMEACNSQAIPYVPLYDSLGANAVEFIINHAEVSIAFVQESKIPAMLTCLPKCTSYLKTIISFGKISSSQKEEAEELGVSCFSWEEFALLGSLDCELPPKQKTDICTIMYTSGTTGEPKGVVLSNEAIMAEVLSTDQLLLETDKVATEEDTYFSFLPLAHVFDQIMETYCIYKGSSIGFWGADVRYLMEDIQELKPTIFCGVPRVYERIYGGAIAKISSGGALRKALFQYAYNYKLRNLEKGLRQDEAAPRLDRLIFDKIKQGFGGRVRLLFSGAAPLSRHVEEFLRVTSCSVLSQGYGLTESCGGCLTSIVNEFSMMGTVGVPYPTIEARLESVPEMGYDALSNVPRGEICLRGKTLFSGYFKRQDLTESALVDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLITSIWVYGNSFESFLVAVVVPDKKALEDWAENHNVTGDFKSLCENLEARKYILDELNNTGQNHQLKGFERLKAVHLDPNPFDIERDLVTPTFKLKRPQLLKYYKDIIDRLYSEAKGTKS* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0603 659 CDD LC-FACS_euk 72 652 IPR045311 GO:0004467|GO:0006631
Vvi3g0603 659 Gene3D - 34 513 IPR042099 -
Vvi3g0603 659 ProSitePatterns Putative AMP-binding domain signature. 224 235 IPR020845 -
Vvi3g0603 659 SUPERFAMILY Acetyl-CoA synthetase-like 42 652 - -
Vvi3g0603 659 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 651 - -
Vvi3g0603 659 Pfam AMP-binding enzyme 54 521 IPR000873 -
Vvi3g0603 659 Pfam AMP-binding enzyme C-terminal domain 531 572 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0603 Vvi-Chr3 5204771 5212667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0603 19 655 Acyl Lipid Metabolism Gene Families AT1G64400 57.994 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0603 K01897 - vvi:100257137 1332.39