Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0594 ATGAGGAATGAGAGAGGAGGCGTGGTGTTGGCGGAGAGGAATGTGCTTCCTCGGCCAAAGCTGAGCGCCATCCTGCGATCAGATCCGAAAAACGATGAAGAGGAGATGAACCGGCGCAGCAATGTGTCGATGGACAGCAGCGTTCCTCCGTCGAGCGGCGAGAATTCTCCCTTGGTTATGTCACCGTGGAACCATCCGTCTTCACCCTTCGCTAAGTCTCCATGGACGAAGTCTTCGTCTCCAATGGGCTTGCCGCAAAACGGGCTGATAGGGTCTATGGTTCGGGAGGAGGGTCATGTGTATTCCTTGGCTGCTACCGGGAATTTGCTGTACACGGGGTCCGATAGCAAGAACATACGTGTGTGGAAGAATTTGAAGGCGTATTCAGGGTTTAAATCCAACAGTGGGCTGGTTAAGGCCATTGTTATCTCCGGCGAGAAGATATTCACCGGCCATCAGGACGGGAAGATTCGAGTGTGGAGGGTCTCGCCCAAGAATCCCAAGCTTCACAAGCGAATTGGAAGCTTACCCACCTTCAAGGACTTCCTCAAGAGCTCCATAAACCCAAAAAACTACGTGAAGGTCCGGCGGAAACGGAGCGTTCTCCGGATAAAGCATTTCGACGCTGTTTCTTGCTTGAGCTTGGACCAAGACCAGGGCCTTCTCTACTCGGGCTCTTGGGACAAGACTCTCAAGGTATGGAGAATCTCCGATTCCAAATGCTTGGAGTCCATCCGAGCCCACGACGATGCTATTAACGCGGTTGTCGCCGGCTTCGCAGGCCTTGTCTTCACCGGTTCGGCTGACGGGACGGTCAAAGTTTGGCACAGGCAGTTACACGGGAAAGGAACGAAGCACCTCTTTCTACAAACACTGCTGAACCAAGAAACTGCAATCACCTCCTTGGCCGTCAACACAGAAGGCGCCATCATATACTGTGGGTCCTCCGACGGCCTCGTCAATTTCTGGGAACGCGAAAAGCATCTTAAACATGGCGGGGTGTTGAGGGGCCACAAGCACGCAGTTCTGTGCCTGGCCACCGCCGGAAACCTCGTGTTCAGCGGCTCCGCGGATAAGAGCATATGCGTGTGGAGAAGGGAAGGTGGTATTCACACCTGTTTGTCTGTTCTCACCGGCCACACCGGCCCAGTAAAGTGCTTGGCGGTGGAGGAAGATCAGGAGTCCACCAAGAGAGATCAGAGGTGGATTGTGTACAGTGGCAGCTTGGATAAGTCCGTGAAGATATGGAGAGTCTCGGAGCAGGCTCCGGATATACAGCAAATGAGGCTCATGGCACAGAACTATGTCCCTTCTCCCCTGTCCTCTCCTGCAAAATGA 1338 0.5374 MRNERGGVVLAERNVLPRPKLSAILRSDPKNDEEEMNRRSNVSMDSSVPPSSGENSPLVMSPWNHPSSPFAKSPWTKSSSPMGLPQNGLIGSMVREEGHVYSLAATGNLLYTGSDSKNIRVWKNLKAYSGFKSNSGLVKAIVISGEKIFTGHQDGKIRVWRVSPKNPKLHKRIGSLPTFKDFLKSSINPKNYVKVRRKRSVLRIKHFDAVSCLSLDQDQGLLYSGSWDKTLKVWRISDSKCLESIRAHDDAINAVVAGFAGLVFTGSADGTVKVWHRQLHGKGTKHLFLQTLLNQETAITSLAVNTEGAIIYCGSSDGLVNFWEREKHLKHGGVLRGHKHAVLCLATAGNLVFSGSADKSICVWRREGGIHTCLSVLTGHTGPVKCLAVEEDQESTKRDQRWIVYSGSLDKSVKIWRVSEQAPDIQQMRLMAQNYVPSPLSSPAK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0594 445 SUPERFAMILY WD40 repeat-like 98 423 IPR036322 GO:0005515
Vvi3g0594 445 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 240 - -
Vvi3g0594 445 MobiDBLite consensus disorder prediction 41 82 - -
Vvi3g0594 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 275 IPR001680 GO:0005515
Vvi3g0594 445 Gene3D - 185 436 IPR015943 GO:0005515
Vvi3g0594 445 Gene3D - 77 181 IPR015943 GO:0005515
Vvi3g0594 445 FunFam BnaA09g40460D protein 284 440 - -
Vvi3g0594 445 CDD WD40 97 417 - -
Vvi3g0594 445 SMART WD40_4 197 235 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 238 276 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 328 365 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 285 324 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 86 123 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 124 161 IPR001680 GO:0005515
Vvi3g0594 445 SMART WD40_4 370 417 IPR001680 GO:0005515
Vvi3g0594 445 FunFam BnaA09g28200D protein 193 280 - -
Vvi3g0594 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 324 IPR001680 GO:0005515
Vvi3g0594 445 MobiDBLite consensus disorder prediction 25 40 - -
Vvi3g0594 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 364 IPR001680 GO:0005515
Vvi3g0594 445 PRINTS G protein beta WD-40 repeat signature 222 236 IPR020472 -
Vvi3g0594 445 PRINTS G protein beta WD-40 repeat signature 404 418 IPR020472 -
Vvi3g0594 445 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Vvi3g0594 445 MobiDBLite consensus disorder prediction 19 82 - -
Vvi3g0594 445 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 44 422 IPR045182 -
Vvi3g0594 445 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 297 323 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 97 123 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 240 275 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 372 416 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 205 234 IPR001680 GO:0005515
Vvi3g0594 445 Pfam WD domain, G-beta repeat 332 364 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0594 Vvi-Chr3 5125033 5126370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0594 204 416 Miscellaneous Gene Families AT5G08390 25.688 5.48e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0594 - - vvi:100248616 904.049