Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0593 ATGGCTGGGTTTCTGAGAAAACTTCTGCCTACTCTGCCTTCAAACCATGATGACGATGATAATCATCATAGTATGGAGTATTCATTTGCTATGGAGTATCATGGGCCTCCGGTCACTTATGATGTGCCTCTCGCAGTTCCTGTTGACATCGACCAAGTCCCTACTGCTGCTGCAGTTGTCTCAGCCTCTTTGGTTGATAACTCGTCGGTGCCGGTTATCCAACCAATTGTAATGGGTAAGCCTTTAAGCAAGAAGTTGGTGGACAAGTTAAAATCAGGCTCTGAAATGACTGCTTTGGGGGAACCTGTCGGCTTGAGTGCAAGAGGTAGTTCAGGTGCAGTAGGTTCCTTAAATGGTGATGAGAGTGCGCCCAAGTTATTAGATGCAATTAGAAGCTCCGGCAGATTTGGATTTTCCAAAATCCATAAAGATTCTTATGAGTTATTGGGAAGTTCAGACATGTTGCAGTTATCCAATGATTGTAAGGATGGTGGAGGCTTTGAAGATTATTTAAGCCATGTCAGTAGCGATTCCAGTGAATCGGGTGTGAGTTCAGAGGTTCTGTCCTCTGAGGATTCCAAAACAGAAAAACCTCGCCATGTCAAAGAACCGTCAAGTGTCACTTTCCGTGATCCTGAATCATATGACATTTTTCAAGAGGAATCCGATCATGCTGAGGCCAGAAATATCCATAGAAGGCGAGCTCCTGAAAGGAATGTGAAGAAAGGATTGTGCTATAGATGCTTGAAAGGAAATCGGTTCACAGAAAAGGAGGTATGCATTGTTTGCAGCGCAAAATACTGTGTTAGTTGTGTGCTGAGAGCAATGGGGTCAATGCCAGAAGGAAGAAAATGTGTTACTTGTATTGGTCTCCCAATTGAAGAGTCAAGGCGTAGGACCCTGGGGAAATGCTCTCAAATGCTCAAGCGATTGCTAAGTGACTTGGAAATAGAACTGATAATGCGTTATGAGCTACTCTGTGAAGTGAATCAGCTGCCACATGAACTTGTTTGTGTGAATGGCGAGCCTCTTTCTCAAGAAGAGATGGTTTTTTTGAAGAGCTGTCCAAAGCCGCCGAAAAAGCTAAAACCCGGAAGATATTGGTATGATAAAGTATCTGGTCTTTGGGGGAAGGAAGGACACAGGCCTTGTCAGATTATTAGCCCCCAGTTGAATGTTGGGGGTCAAATCAAGCGAAATGCTAGCAATGGAAATACAAAAATATTGGTAAATTCTCGGGAGATTACTGAAGTGGAGCACTGGATGATGCATGTGGCAGGAATCCGATGTGTAGGAAATATTAGCCTCTGGTTGAGTGCAGATGGAACCTATCAGGAAGAGGGACAGAAGAACATGATAGATCCAATAGGGAACAAGTCTGGAGTGAGGCTACTCTGTGCTGTCTTCTCTTTACCAATTCTTCCTGATTCTGCAAATCCTTCTGGGGGTGAAGTAAATGATCCTGTCAATGAGGTTGGTCTGAACCGCCTTGAGCAGAAAGCATCTCATAAACTTTTCCTCATTGGTCCTAATAGATCTGGGACAAGCACTATATTTAAACAGGCCAAGCTTCTATATAATGTTCCTTTCTCGGAAGATGAGCGTCAAAATATTAAGTTCATGATCCAGACCAACTTGTATTGCTATCTTGGTATATTGCTTGAGGGACGTGAACGATTTGAAGAAGAAATTTTGACTGAAATGCAGAAAAGACAGTCTGTTGATGAGCCTGGTCCTTCAGGGAACACTGGCTTGACTCAGGATAAAACAATCTATTCCATTGGCCCTAGGCTGAAAGCATTCTCTGATTGGCTTCTCCAAGTTATGGTGTCAGGTAATTTAGAAGTCATTTTCCCTGCTGCTACTCGTGAATATGCACCATTAGTTGAGGAGCTGTGGAAAGATGCAGCAATTCAAGCCACATACAACCGAAGAAGTGAACTAAAAATGCTACCCAGAGTTGCTAGTTATTTCTTAGATCAGTCTGTTGAGGTTTCAAAGGTAGATTATGAGCCCTCAGATGTGGATATCTTGTATGCCGAGGGTATTACTTCATCAAATGGGCTTGCTTGTACAGAATTTTCATTAGAGGATGTCGACCTGGACCCTCATAATCAGCCCGGTACATTGCCAAGTCGCAGGTTCGAACTCATCAGAGTGCACCCAAAAAACCTTGGGGACAACTGCAAGTGGTTGGAGATGTTTGAAGATGTTGGGATTGTCTTATTTTGTGTTTCCTTATCAGACTACGATGAATTGTCTGATGGCCTTAATGGGTTCTCTAGGAACAAGATGCTGGAGAGCAAGAAGCTCTTTGAAAGAGTAGTCACTCATCCTAACTTCGAGCACAAGGACTTCCTCCTGATACTCAACAAGTTCGACCTCTTAGAGGAAAAAATTGATCTGTCTCCTCTCACCAAATGTGAGTGGTTCCATGACTTTACTCCGGTCGTCAGTCACAACTACAACAGCCGGAGTAGTATAAGTAACACTCATTCATTGGCTCAAATTGCCTTCCACTACATCGCCCTAAAGTTCAAGACACTGTTCTATTCCCTTACTGGACGCAAGTTGTATGTTTCATCAGTCACAGGATTGGAGCCTGATACTGTTGGTGAAGCTCTCACATATGCAGGGACGATTCTGAAGTGGGATGAGGAGAAGAAACCCAACTACGTTCTCTGTGACTCTTCCTACAGCCTTGACACCAGCACCTCATGA 2721 0.4362 MAGFLRKLLPTLPSNHDDDDNHHSMEYSFAMEYHGPPVTYDVPLAVPVDIDQVPTAAAVVSASLVDNSSVPVIQPIVMGKPLSKKLVDKLKSGSEMTALGEPVGLSARGSSGAVGSLNGDESAPKLLDAIRSSGRFGFSKIHKDSYELLGSSDMLQLSNDCKDGGGFEDYLSHVSSDSSESGVSSEVLSSEDSKTEKPRHVKEPSSVTFRDPESYDIFQEESDHAEARNIHRRRAPERNVKKGLCYRCLKGNRFTEKEVCIVCSAKYCVSCVLRAMGSMPEGRKCVTCIGLPIEESRRRTLGKCSQMLKRLLSDLEIELIMRYELLCEVNQLPHELVCVNGEPLSQEEMVFLKSCPKPPKKLKPGRYWYDKVSGLWGKEGHRPCQIISPQLNVGGQIKRNASNGNTKILVNSREITEVEHWMMHVAGIRCVGNISLWLSADGTYQEEGQKNMIDPIGNKSGVRLLCAVFSLPILPDSANPSGGEVNDPVNEVGLNRLEQKASHKLFLIGPNRSGTSTIFKQAKLLYNVPFSEDERQNIKFMIQTNLYCYLGILLEGRERFEEEILTEMQKRQSVDEPGPSGNTGLTQDKTIYSIGPRLKAFSDWLLQVMVSGNLEVIFPAATREYAPLVEELWKDAAIQATYNRRSELKMLPRVASYFLDQSVEVSKVDYEPSDVDILYAEGITSSNGLACTEFSLEDVDLDPHNQPGTLPSRRFELIRVHPKNLGDNCKWLEMFEDVGIVLFCVSLSDYDELSDGLNGFSRNKMLESKKLFERVVTHPNFEHKDFLLILNKFDLLEEKIDLSPLTKCEWFHDFTPVVSHNYNSRSSISNTHSLAQIAFHYIALKFKTLFYSLTGRKLYVSSVTGLEPDTVGEALTYAGTILKWDEEKKPNYVLCDSSYSLDTSTS* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0593 906 Gene3D - 678 890 IPR027417 -
Vvi3g0593 906 Gene3D - 531 677 IPR011025 GO:0007165
Vvi3g0593 906 MobiDBLite consensus disorder prediction 568 587 - -
Vvi3g0593 906 SUPERFAMILY Transducin (alpha subunit), insertion domain 530 680 IPR011025 GO:0007165
Vvi3g0593 906 FunFam Guanine nucleotide-binding protein subunit alpha 703 833 - -
Vvi3g0593 906 MobiDBLite consensus disorder prediction 173 189 - -
Vvi3g0593 906 FunFam Extra-large guanine nucleotide-binding protein 3 531 681 - -
Vvi3g0593 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 500 884 IPR027417 -
Vvi3g0593 906 Pfam G-protein alpha subunit 495 872 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 SMART galpha_1 483 866 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 PRINTS Alpha G protein (transducin) signature 786 795 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 PRINTS Alpha G protein (transducin) signature 504 519 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 PRINTS Alpha G protein (transducin) signature 738 766 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 MobiDBLite consensus disorder prediction 173 208 - -
Vvi3g0593 906 PANTHER OS01G0977800 PROTEIN 12 408 - -
Vvi3g0593 906 MobiDBLite consensus disorder prediction 573 587 - -
Vvi3g0593 906 ProSiteProfiles G-alpha domain profile. 501 893 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi3g0593 906 MobiDBLite consensus disorder prediction 190 208 - -
Vvi3g0593 906 CDD G-alpha 503 860 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0593 Vvi-Chr3 5115416 5120632 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0593 - - vvi:100243480 1779.99