Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0559 ATGCCCCCTGTCAATTTCAATTTTTATCGTCACCTTTCTTCCAATCCCACTCAACGGCTATCTCCCCTAGCTCAACCACACGCTTCAATTCTACGGAAACTCAAAGATCTCAAACCCCTTCAACAAATTCATGCCCAAATCATCACCTCTGGCCTCACCCACAACACCTTCCTCTCCAACAGTTTGATGAACGCATACGTATACTGTGGGCTTTTGGCTGACGCCAAGCAGATTTTTCACCATACACCGTACAAGAATGTGGTTTCCTGGACAATTTTGATATCTGGGCTTGCTAAAAATGACTGTTTTGTTGAGGCGATTGATGTGTTCCGCGAGATGATTATGGGTAACTTTAAGCCCAATGCCGTTACAATTTCGAGTGTTTTGCCTGCTTTTGCTAATCTAGGGTTGATCCGGATTGCGAAATCAGTGCACTGTTTTTGGGTTCGGGGTGGTTTTGAAGGTAATGTGTTTGTGGAGACGGCTTTGGTTGACATGTACTCGAAATTTGGGTGCATGGGTGTTGCGAGGCAGTTGTTTGAGAGTATGTCAGAGAGAAATGTTGTTACGTGGAATGCGATTGTTTCAGGTTATTCTGATCATGGGTTTTCTGAGGAAGCGATTGATCTTTTTAATTTGATGCGGAGAAAAGGGTTGCTAGTGGACTTCTATACGATAATGAGTTTGATACCTGCTTCTTTGAGTGTGGGTTGTTTGCAGGTGGGAACTGGAATCCATGGTTTTATAATTAGGACTGGGTATGAGAATGATAAACATATTAAAACTGCTCTAATGGATATATATGTAAGTCACAATTGTGTTGATGATGCTCATCGTGTATTTAGTGAGATGTCTGTGAAGGATGTGGCTGCATGGACACTAATGCTAACAGGCTTTTCAAGTGGTCGACATTGGGATAGAGCCATCAAACATTTCAATAAAATGTTGGGAATACAAAATTTAAAATTAGATTCTATTGCTTTGATGGGTATTCTTTCAAGCTGCAGCCATTCAGGAGCTTTGCAACAAGGTAGACGAGTTCATGCATTGGCTATAAAAACATGTTTTGCAAATAATATATTTGTAGGATCTGCTGTTATAGACATGTATGCAAACTGTGGAAACTTGGAAGATGCAAAAAGGTTTTTTTATGGGATGGGAGAAAAGGATGTTGTGTGCTGGAATGCTATGATTGCTGGTAATGGGATGAACGGGTATGGTACAGATGCAATTGATCTCTTCTTGCAAATGAAGGGTTCAGGTCTAGATCCAGATGAATCAACTTTTGTCAGTGTCTTGTATGCATGTAGTCATGCTGGGATGGTTTATGAAGGGCTCCAAATTTTTTATCATATGGTCAAAACCTCGCATGTCATTCCCAATTTGCAACATTATGCTTGTGTTATTGATATTCTTGGCCGTGCAGGGCAACTAGATGCTGCTTATTCATTCATTAATAACATGCCATTCCAGCCGGATTTTGATGTTTACAGCACCTTGCTTGGTGCATGTAGAATTCATGGTAACATAAAGTTGGGGCATGAGATTTCCCAGAAAATTTTTGAGATGGAGCCAAATGATGCTGGGTATTATGTTCTGCTTTCAAACATGTATGCTTTGGCAGGAAACTGGGAGGGTGTAAAGATGACCAGAGCATCACTGAGATCAAAGAGAATGAAGAAGGACCCAGGCTTTAGTTCAATTGAGATAAATCAAGAAATTTATACATTCATGGCAGGAGAAAAAGATCATCCTCAGTACTTCAAAATTGAAGGGATTTTAAAGGGCCTAATCTTGAAAATAAAAAAAGCAGGTTATGTACCCAACACTAATGTTCTACTCCAAGATGTTTCAGATGATATGAAGAAGGATATCTTGTATCATCACAGTGAAAAGATGGCCATTGCCTTTGGGTTGATGAGAACCAAGCCAGAGACAATCATTAGGATAACAAAGAATCTGCGCACCTGCGATGATTGCCACACTGCTAGCAAGTTTGTTTCCAAAGTTTTTGGAAGAGTACTTGTTATTAAAGATGCCAACCGGTTCCATGTTTTCCAAGATGGAGTTTGTTCTTGCAGAGACTATTGGTAA 2094 0.4021 MPPVNFNFYRHLSSNPTQRLSPLAQPHASILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0559 697 FunFam Pentatricopeptide repeat-containing protein At1g06140, mitochondrial 31 142 - -
Vvi3g0559 697 Pfam PPR repeat 291 316 IPR002885 -
Vvi3g0559 697 Pfam PPR repeat 262 287 IPR002885 -
Vvi3g0559 697 Pfam PPR repeat 60 80 IPR002885 -
Vvi3g0559 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 21 634 IPR046960 GO:0003723|GO:0009451
Vvi3g0559 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 86 120 IPR002885 -
Vvi3g0559 697 FunFam Pentatricopeptide repeat-containing protein At4g33990 143 242 - -
Vvi3g0559 697 Pfam E motif 507 569 IPR046848 -
Vvi3g0559 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Vvi3g0559 697 FunFam Putative pentatricopeptide repeat-containing protein At3g01580 366 577 - -
Vvi3g0559 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Vvi3g0559 697 Pfam PPR repeat family 85 133 IPR002885 -
Vvi3g0559 697 Pfam PPR repeat family 389 436 IPR002885 -
Vvi3g0559 697 Pfam PPR repeat family 186 230 IPR002885 -
Vvi3g0559 697 NCBIfam pentatricopeptide repeat 262 289 IPR002885 -
Vvi3g0559 697 NCBIfam pentatricopeptide repeat 392 426 IPR002885 -
Vvi3g0559 697 NCBIfam pentatricopeptide repeat 88 122 IPR002885 -
Vvi3g0559 697 NCBIfam pentatricopeptide repeat 189 222 IPR002885 -
Vvi3g0559 697 Gene3D Tetratricopeptide repeat domain 23 142 IPR011990 GO:0005515
Vvi3g0559 697 Gene3D Tetratricopeptide repeat domain 247 343 IPR011990 GO:0005515
Vvi3g0559 697 FunFam Pentatricopeptide repeat-containing protein At4g39952, mitochondrial 246 343 - -
Vvi3g0559 697 Gene3D Tetratricopeptide repeat domain 365 577 IPR011990 GO:0005515
Vvi3g0559 697 Gene3D Tetratricopeptide repeat domain 143 246 IPR011990 GO:0005515
Vvi3g0559 697 Pfam DYW family of nucleic acid deaminases 605 697 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0559 Vvi-Chr3 4870222 4872315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0559 60 697 Glycoside Hydrolase AT3G49170 34.930 2.09e-141 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0559 - - vvi:100253709 1405.96