Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0554 ATGAAGGCGATGGAGACTTTGCAAGATCTGATTGAGGAGGCCAAACTTCGAACGGTTTGGTGGGCTTTGTGTATTTTCGCAATTTCTTATTTTCTTTCTCATACAAGTAAATCAATGTGGATGAATATACCCATATCAATTCTTTTGGTTTCCGCATTACGCATTTTATCTAATGAGGTGGAGTTCCGGTGGAGGGTACGATCAGTTCCTCGGCTGACATTTCTATCTCATTTGGAAAAGAAGCAGTTGTCTGTGAATGACTCACGCCTTGCCACTTCACCGCCCCCGCCAAAATGGAAGAGAAAAATTGATTCTCCCATTGTGGAGGCTGCTATTAGTGGGTTTATTGATAAGATTCTAAAGGATTTTGTGGTAGATTTGTGGTATTCGGATATAACACCAGACAGAGAGGCCCCTGAGCTGATACGTGCAGTAATCATGGATGTTCTTGGTGAAATTTCCAGAAGGGTTAAAGAGATAAACCTTGTTGATTTGTTAACAAGGGATATTGTTGACTTGATAGGGAATCATCTAGATCTTTTCAGAAGAAACCAAGCTGCTATTGGTGTGGATGTTATGGGAACACTTTCTTCTGAAGAAAGGGATGAAAGGTTGAAACATCATCTTATGGCTTCGAAGGAGCTTCATCCTGCGTTGATATCTTCCGAGTGTGAGTACAAGGTTCTTCAGCGGCTTATTGGTGGACTGTTAGCTGTGGTGCTAAGGCCACGGGAAGCTCAATGCCCCCTGGTTCGATGCATTGCTCGAGAGATTGTAACTTGCTTGGTAATGCAGCCTGTTATGAATTTAGCAAGCCCTATATACATCAACGAGTTGATTGAATGTCTCTTCCTTGCCATAAAAGATGGTAGTTCTAAAGACTTAGCTGATAATCAATTATTTAGTACAGTGGGTCTTGACCATAACAATTCTGTTGTGGCTGGAAGTTCACAAAATGGTGAATCTACCTCGAGAAAGTATGCAGCCTCCTATAATGGAGGGACTGAGTTGGATGATTCAGGGGATCATGAAGATACTATGCAGCCACGGCCTGCTGATTGGGCTCGTTTACTAGAAGCCGCAACCCAGAGACGAACGGAAGTTCTCACTCCTGAAAATCTTGAAAATATGTGGACTAAAGGAAGAAATTATAAAGCTAAAGTTCGCAAGGATGTTAAGGCAGAATCTCAGGCTCCTGTAGTGAAGGGTTCAGGAATTAGTAGTTCTGTATCTACAAGAAATTTGGAAAAGGAAATACTAACCATCAAGCCTCGACATTCTACTGCTAGACCAGAAGACAGAGCTATGGTGCCGCGAACAGCTGGATTAAGTGTTGATGCACAATTAAGTGATGGACACAATGATATGACACAGTTGTCACAGGATCTAAACAAGGGATCTTCTCTTGATGGAGGGTATTTTGTTGATGGATTGAAGGATAATACCATTGTTACTGCTGATGGAAATAAAAGCAGACTTAAGAGATCAAATAGTACTTCTGCTTTAAAAGCCAAACCTGACAATAAAAAAGCATTTACAGGTGAAGGTGGAGGGCCGATTATTTCAGAGTTCTACAGCCCAAATTTTGATCGGGATAATGAAGTGTATCGTGTTAATAACCCCTCAGATATGATGATCCGCGGTGGGGGGCCACATGATCCTAAGCTCAAGTGCAGGGTTATAGGAGCTTACTTTGAGAAACTTGGGTCAAAATCTTTTGCGGTTTATTCAATTGCAGTGACAGATGCAGAGAGCAAAACTTGGTTTGTGAAGAGAAGATATAGGAATTTTGAGAGATTGCATCGACACCTCAAGGATATTCCTAACTATACATTACATTTACCTCCCAAAAGGATATTTTCATCAAGCACAGAAGATTCTTTTGTTCATCAGCGCTGCATTCAGCTTGACAAATATCTGCAAGATTTGCTGTCAATAGCCAATGTTGCTGAACAACATGAAGTGTGGGACTTTTTAAACCTTTCCTCTAAGAATTACTCTTTTGGAAAGTCTTCCTCAGTGATGAGAACCCTGGCAGTAAATGTGGATGATGCTGTGGATGATATTGTTCGGCAAGTCAAAGGGGTTTCAGATGGCTTAATGCGAAAGGTTGTCGGCTCATCTTCCTCCCCTAATGATGCCTCTCCAATTTCAGGCATGAACTTGTCCTGGCATGCAGATGAAGCTTTAAGACATGACATGATGAAAACAGAAAGTAGCTTTTCTGAATATGAGGAAGGTGATAAAGATGGAACCCATGGCCATGAGGAAGTTGAATCTAGTGCACAAGCTCTTGGATGGCATTCGGATAATGAATTGAACTCAAAGGGTTTTCCACCTAGGGTGATCAAACGTGGTAATGAGCCTAAAAGCTTAGATTCTGGGGAGAAACGTGGTTCAGAAATGAAATCAGAATGGATTGACCAAGCAGCAAATTTTCTGTTAACCTCTGATCCATTGGTGGATCTAGTTGGAATGCCACCTGAGTGGGCACCACCTAATGTAAGTGTACCGTTGTTGAATTTAGTTGATAAGGTATTTCAGCTCAAGAGAAGAGGTTGGCTAAGGCAAGTTAATTTTTTGCTTTGTTTCATTAACTATCTCTTTCTTTATAGTTTCAAATAA 2625 0.4118 MKAMETLQDLIEEAKLRTVWWALCIFAISYFLSHTSKSMWMNIPISILLVSALRILSNEVEFRWRVRSVPRLTFLSHLEKKQLSVNDSRLATSPPPPKWKRKIDSPIVEAAISGFIDKILKDFVVDLWYSDITPDREAPELIRAVIMDVLGEISRRVKEINLVDLLTRDIVDLIGNHLDLFRRNQAAIGVDVMGTLSSEERDERLKHHLMASKELHPALISSECEYKVLQRLIGGLLAVVLRPREAQCPLVRCIAREIVTCLVMQPVMNLASPIYINELIECLFLAIKDGSSKDLADNQLFSTVGLDHNNSVVAGSSQNGESTSRKYAASYNGGTELDDSGDHEDTMQPRPADWARLLEAATQRRTEVLTPENLENMWTKGRNYKAKVRKDVKAESQAPVVKGSGISSSVSTRNLEKEILTIKPRHSTARPEDRAMVPRTAGLSVDAQLSDGHNDMTQLSQDLNKGSSLDGGYFVDGLKDNTIVTADGNKSRLKRSNSTSALKAKPDNKKAFTGEGGGPIISEFYSPNFDRDNEVYRVNNPSDMMIRGGGPHDPKLKCRVIGAYFEKLGSKSFAVYSIAVTDAESKTWFVKRRYRNFERLHRHLKDIPNYTLHLPPKRIFSSSTEDSFVHQRCIQLDKYLQDLLSIANVAEQHEVWDFLNLSSKNYSFGKSSSVMRTLAVNVDDAVDDIVRQVKGVSDGLMRKVVGSSSSPNDASPISGMNLSWHADEALRHDMMKTESSFSEYEEGDKDGTHGHEEVESSAQALGWHSDNELNSKGFPPRVIKRGNEPKSLDSGEKRGSEMKSEWIDQAANFLLTSDPLVDLVGMPPEWAPPNVSVPLLNLVDKVFQLKRRGWLRQVNFLLCFINYLFLYSFK* 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0554 874 Pfam PXA domain 105 281 IPR003114 -
Vvi3g0554 874 MobiDBLite consensus disorder prediction 739 801 - -
Vvi3g0554 874 ProSiteProfiles PXA domain profile. 105 287 IPR003114 -
Vvi3g0554 874 Gene3D - 553 671 IPR036871 GO:0035091
Vvi3g0554 874 MobiDBLite consensus disorder prediction 312 348 - -
Vvi3g0554 874 SMART PX_2 553 662 IPR001683 GO:0035091
Vvi3g0554 874 ProSiteProfiles PX domain profile. 554 666 IPR001683 GO:0035091
Vvi3g0554 874 CDD PX_SNX19_like_plant 556 661 - -
Vvi3g0554 874 MobiDBLite consensus disorder prediction 312 330 - -
Vvi3g0554 874 MobiDBLite consensus disorder prediction 494 515 - -
Vvi3g0554 874 PANTHER PX SERINE/THREONINE KINASE PXK 101 858 - -
Vvi3g0554 874 SMART PXA_3 105 288 IPR003114 -
Vvi3g0554 874 Pfam PX domain 584 660 IPR001683 GO:0035091
Vvi3g0554 874 MobiDBLite consensus disorder prediction 786 801 - -
Vvi3g0554 874 SUPERFAMILY PX domain 552 663 IPR036871 GO:0035091
Vvi3g0554 874 MobiDBLite consensus disorder prediction 739 757 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0554 Vvi-Chr3 4827356 4844436 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0554 K17925 - vvi:100260575 1684.85