Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0548 ATGGGAGAGATTGATCCAGCCTTCATCCAATCCATTGAACACAGGCCAAAGCTCACTGTCACCGATCCCGGAGAAATCCCGGTCATCGATCTCTCGGCGTTGCACTCGGGCGCCGTGGATCTCCTAGTCGCTGATATTGGCAAAGCATGCGAGGAGTGGGGGTTCTTTAAAGTGATCAACCATGGAGTGCCACTGGAAGTCGTTCGGAGAATTGAGGCTGCGATGAAGGAGTTTTTCGATCAGAGTATCGATGAGAAGAGGAAGGTGAAGAGGGATGAGGCGAAGCCTATGGGCTATCATGATTCAGAGCATACCAAAAATGTTAGGGATTGGAAAGAAGTGTTGGATATTGCTGTGGAAGATCCCCTGGTGATCTCAGCCTCTCCAGACCCTCAAGATCAGGAATTGACCAAGTATTACAACCAGTGGCCTGAGTACCCTCCAGAATTTAGGAAAATTTTGAAGGAATATGCTGGAGAAATAGAAAAATTAGCTTTCAAGCTCTTGGAACTCATCTCCTTAAGCTTAGGCTTGGCCGGGGACCGGTTGATTGAATTCTTCCAAGGGCAAACCAGCTTTATCCGACTCAATCACTATCCGCCGTGCCCGTGGCCGGAGCTCGCTCTCGGTGTGGGTCGGCACAAGGACGCAGGAGCTTTAACCGTTCTCTTTCAAGATGGTGTCGGGGGATTGGAAGTGAAGCGAAAAGCCGATGGAGAATGGGTTGGAGTAAAACCTATTCCAAATGCTTATATCATTAATGTTGGTGATATTATTCAGGTGTGGAGCAATGATAAATATGAGAGCGTGGAGCACAGGGTGGTGGCCAATAGTGAGAAGGAAAGGTTTTCGATTCCATTCTTCTTATTTCCGGCGCACCATGTGAATGTAAAGCCATTGGAGGAGTTGACCAATGAGGAAAACCCCCCTAAATTTAAAGAGTACAATTGGGGGAAGTTCATGGCAACTAGAAACAGGAGTGATTTCAAGAAGCAAGCTGTTGAAAACATCCAAATTCATCATTTCAGAGTTTCCGAACAATAA 1044 0.4684 MGEIDPAFIQSIEHRPKLTVTDPGEIPVIDLSALHSGAVDLLVADIGKACEEWGFFKVINHGVPLEVVRRIEAAMKEFFDQSIDEKRKVKRDEAKPMGYHDSEHTKNVRDWKEVLDIAVEDPLVISASPDPQDQELTKYYNQWPEYPPEFRKILKEYAGEIEKLAFKLLELISLSLGLAGDRLIEFFQGQTSFIRLNHYPPCPWPELALGVGRHKDAGALTVLFQDGVGGLEVKRKADGEWVGVKPIPNAYIINVGDIIQVWSNDKYESVEHRVVANSEKERFSIPFFLFPAHHVNVKPLEELTNEENPPKFKEYNWGKFMATRNRSDFKKQAVENIQIHHFRVSEQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0548 347 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 190 291 IPR005123 -
Vvi3g0548 347 PRINTS Isopenicillin N synthase signature 214 235 - -
Vvi3g0548 347 PRINTS Isopenicillin N synthase signature 279 297 - -
Vvi3g0548 347 PRINTS Isopenicillin N synthase signature 46 63 - -
Vvi3g0548 347 Gene3D - 1 331 IPR027443 -
Vvi3g0548 347 FunFam Gibberellin 20 oxidase 1 1 330 - -
Vvi3g0548 347 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 26 322 - -
Vvi3g0548 347 Pfam 2OG-Fe(II) oxygenase superfamily 192 291 IPR044861 -
Vvi3g0548 347 SUPERFAMILY Clavaminate synthase-like 4 328 - -
Vvi3g0548 347 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 145 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0548 Vvi-Chr3 4798956 4800827 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0548 9 344 Glycosyltransferase AT5G59530 32.486 5.36e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0548 - - vvi:100257318 692.189