Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0547 ATGGGAGAGGTCGATCCAGCCTGCATCCAAGACACCCAACATAGGCCTAAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTCATTGATCTCTCCTCCGCCAATGCTTTCAACCATGTTTCTCAAATAGCTGATGCATGCAAGAACTGGGGCTTCTTTCAAGTCATCAACCATGGGGTGCCCTCCGAGTCTCGTCGTAAAATTGAGGATGCCGCGAGGAAGTTCTTCGCTCTCCCATTGGAGGAGAAGAGGAAAGTAAGTAGAGATGAGGTGAATCCTTTGGGGTATTTCGATACTGAGCATACCAAGAACGTTAGGGACTGGAAGGAAGTCTTTGATCTCGTGGTGTCATCCCCCGCCTTTATCCCTGCTTCGCCTGATCCTGATGAAAAGGAGCTCAATGAGCTGATCAATCAGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTTTGTGAAGAATATGCTAGAGAAATGGAAAAACTAGCTTTCAAGCTGTTGGGACTCATCTCTCTGAGCTTAGGTTTTCCAGAGAACAGATTCAATCTTCTCTTTGAAGAATCAACAAACTTCATCCGCTTCAATCACTACCCACCTTGCCCCATCCCTCACCTAGCTCTGGGCGCTGGACGCCACAAGGATGGCGTAGCCTTAACCATCCTTGCCCAGGATGATGTTGGAGGGCTGCAAGTAAAGCTAAAAACCAATGGAGAATGGGTTCGAGTGAAGCCCACCCCAGATACTTATATCATCAACGTTGGGGATATAGTTCAGGTCTGGAGCAACGATACTTTTGAAAGTGTGGAGCACAGGGTGATGGTGAATTCAGAGGGGGAAAGGTTCTCAATTCCGTTCTTTTTCAGTCCCGGGCACCATGTTTGGGTGAAGCCCTTGGAGGAGCTGACGAAGGGGGAAAAGCCAAAGTATAGAGCATACAACTAG 939 0.4867 MGEVDPACIQDTQHRPKLAVIEAEGIPLIDLSSANAFNHVSQIADACKNWGFFQVINHGVPSESRRKIEDAARKFFALPLEEKRKVSRDEVNPLGYFDTEHTKNVRDWKEVFDLVVSSPAFIPASPDPDEKELNELINQWPQYPPELREVCEEYAREMEKLAFKLLGLISLSLGFPENRFNLLFEESTNFIRFNHYPPCPIPHLALGAGRHKDGVALTILAQDDVGGLQVKLKTNGEWVRVKPTPDTYIINVGDIVQVWSNDTFESVEHRVMVNSEGERFSIPFFFSPGHHVWVKPLEELTKGEKPKYRAYN* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0547 312 Gene3D - 1 312 IPR027443 -
Vvi3g0547 312 Pfam 2OG-Fe(II) oxygenase superfamily 190 288 IPR044861 -
Vvi3g0547 312 FunFam Gibberellin 20 oxidase 1 1 312 - -
Vvi3g0547 312 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 142 IPR026992 -
Vvi3g0547 312 SUPERFAMILY Clavaminate synthase-like 8 307 - -
Vvi3g0547 312 PRINTS Isopenicillin N synthase signature 211 232 - -
Vvi3g0547 312 PRINTS Isopenicillin N synthase signature 276 294 - -
Vvi3g0547 312 PRINTS Isopenicillin N synthase signature 43 60 - -
Vvi3g0547 312 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 288 IPR005123 -
Vvi3g0547 312 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0547 Vvi-Chr3 4782500 4783619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0547 10 309 Glycosyltransferase AT5G59530 36.164 3.12e-49 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0547 - - vvi:100252188 647.891