Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0545 ATGAAAAAGCCCAAATTCGGAGGTCAAGCTTTCTACTGTGGGAAGAATGGTGCGACTCATCTTTCCGATGCCACCGGGAGTCCTCATACCCAGATTTCAGCATCTGACACAGTTTGGAGCAATGATAAATATGAGAGCGTGGAGCACATGGTGGTGGCGAATAGTGAGAAGGAAAGGTTTTCGATTCCATTCTTTTTCTTACCGGTGCATCATGTGAATGTGAAGCCATTGGAGGAGTTGACCAATGAGGAAAACCCCCCTAAATTTAAAGAGTACAACTGGGGAAAGTTCATGGCAACTAGAAACAGGAGTGATTTCAAGAAGCAAACTGTCGAAAACATTCAGATTCATCATTTCAGAGTTTCCGAACAATGA 375 0.4347 MKKPKFGGQAFYCGKNGATHLSDATGSPHTQISASDTVWSNDKYESVEHMVVANSEKERFSIPFFFLPVHHVNVKPLEELTNEENPPKFKEYNWGKFMATRNRSDFKKQTVENIQIHHFRVSEQ* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0545 124 SUPERFAMILY Clavaminate synthase-like 38 105 - -
Vvi3g0545 124 Gene3D - 28 123 IPR027443 -
Vvi3g0545 124 FunFam Os08g0249900 protein 28 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0545 Vvi-Chr3 4775199 4779682 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0545 38 97 Glycosyltransferase AT5G59530 41.176 1.24e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0545 - - vvi:100257318 169.088