Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0544 ATGGGAGAGGTCGATCCAGCCTTCATCCAAGACACCCAACACAGGCCTGAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTCATTGATCTCTCTTCCGCCAATGCTTCCAACCATGTTTCTCAAATAGCTGATGCATGCAAGAACTGGGGCTTCTTTCAAGTCATCAACCATGGGGTGCCCTCGGAGTCTCGTCGTAAAATTGAGGATGCCGCGAGGAAGTTCTTCGCTCTCCCACTGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTTTGGGGTACTTTGATACTGAGCATACCAAGAACGTTAGGGACTGGAAGGAAGTCTTTGATTTCGTGGTGCCTACCCCCGCCTTCATCCCTGCTTCGCCTGATCCTGACGACAAGGAGCTCAAAGAGCTGACCAATCAGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTATGTGAAGAATATGCTAGAGAAATGGGAAAACTAGCTTTCAAGCTGTTAGGACTCATCTCACTAAGCTTAGGTTTGCCAGAAAACAGATTCAATATTCTCTTTGAAGAATCAACAAACTTCATCCGCCTCAATCACTACCCACCTTGCCCCATCCCTCACCTAGCTTTGGGCGTTGGTCGCCACAAGGATTCCAGAGCCTTAACCATCCTTGCCCAGGATGATGTTGGAGGGTTGGAAGTAAAGCGAAAAACCAATGGAGAATGGGTTCGAGTTAAGCCCACCCCAGATGCTTTTATCATCAATGTTGGGGATATAATTCAGGTCTGGAGCAACGATACTTATGAAAGTGTCGAGCACAGGGTGACGGTGAATTCAGAGAGGGAAAGGTTCTCAATTCCGGTCTTTTTCAGTCCCGGGCACCATGTTTGGGTGAAGCCCTTGGAGGAGCTGACGAAGGGAGAAAAGCCAAAGTACAGAGCATACAACTGGGGAAAGTTCTTTGCTGCGAGAAGGCGCATGTATCCAATGGCATCAGAGGGGAGACAGGCTAATCCCGTCAAGCACTTTGTTCTAGTTCATGGGTCTTGCCATGGTGCCTGGTCTTGGTACAAGATTGTGGCACTACTAAAATCATCTGGCCACAAAGTTACTGCTCTGGACTTGGCTGCTTCTGGAATTAACCCAAAACAAGTGGGTGATCTGCGATCAATTTCTTGGTATTTCCAGCCACTGAGGGACTTCGTGGAGTCACTCCCTGCAGATGAGAGGGTGGTTCTCGTTGGACACAGCTTGGGTGGATTGGCCATTTCTCAGGCCATGGAGAAGTTCCCAGAAAAGGTTTCTGTAGCTGTTTTTGTTACTGCCTCAATGCCTGGTCCCACTCTCAACATTTCCACTCTCAATCAAGAGTCACTCAGGAGACAAGGTCCTCTACTAGACAGCCAGTTCACATATGATAATGGCCCCAACAATCCTCCCACCACTTTCAGCTTTGGCCCCTTGTTCTTATCACTGAATGTGTATCAGTTGAGCCCAACTGAGGACTTGGCACTAGGGACTGTGTTGATGAGACCCGTACGCTTGTTCATTGAAGAAGACATGTCAAATGAGCTCATGTTGTCGAAGAAATATGCCTCGGTTAAACGTGTCTTTATTATTTCAGAGGAAGACAAGCTGGGGAAAAGGGATTTTCAACTCTGGATGATTGAAAAAAACCCACCTGATGCTGTTAAAGAGATTAAAGGATCTGATCACATGGTCATGATCTCTAAGCCAAAAGAGCTTTGGGTTCACCTGCAGGCAATTGCTGAGAAGTATTCTTGA 1773 0.4777 MGEVDPAFIQDTQHRPELAVIEAEGIPLIDLSSANASNHVSQIADACKNWGFFQVINHGVPSESRRKIEDAARKFFALPLEEKRKVSRDEVNPLGYFDTEHTKNVRDWKEVFDFVVPTPAFIPASPDPDDKELKELTNQWPQYPPELREVCEEYAREMGKLAFKLLGLISLSLGLPENRFNILFEESTNFIRLNHYPPCPIPHLALGVGRHKDSRALTILAQDDVGGLEVKRKTNGEWVRVKPTPDAFIINVGDIIQVWSNDTYESVEHRVTVNSERERFSIPVFFSPGHHVWVKPLEELTKGEKPKYRAYNWGKFFAARRRMYPMASEGRQANPVKHFVLVHGSCHGAWSWYKIVALLKSSGHKVTALDLAASGINPKQVGDLRSISWYFQPLRDFVESLPADERVVLVGHSLGGLAISQAMEKFPEKVSVAVFVTASMPGPTLNISTLNQESLRRQGPLLDSQFTYDNGPNNPPTTFSFGPLFLSLNVYQLSPTEDLALGTVLMRPVRLFIEEDMSNELMLSKKYASVKRVFIISEEDKLGKRDFQLWMIEKNPPDAVKEIKGSDHMVMISKPKELWVHLQAIAEKYS* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0544 590 PRINTS Isopenicillin N synthase signature 276 294 - -
Vvi3g0544 590 PRINTS Isopenicillin N synthase signature 43 60 - -
Vvi3g0544 590 PRINTS Isopenicillin N synthase signature 211 232 - -
Vvi3g0544 590 Gene3D - 1 323 IPR027443 -
Vvi3g0544 590 Gene3D alpha/beta hydrolase 335 590 IPR029058 -
Vvi3g0544 590 FunFam (S)-hydroxynitrile lyase 334 590 - -
Vvi3g0544 590 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 288 IPR005123 -
Vvi3g0544 590 PANTHER METHYLESTERASE FAMILY MEMBER 337 587 IPR045889 -
Vvi3g0544 590 FunFam Gibberellin 20 oxidase 1 1 324 - -
Vvi3g0544 590 Pfam Alpha/beta hydrolase family 339 578 IPR000073 -
Vvi3g0544 590 SUPERFAMILY Clavaminate synthase-like 3 322 - -
Vvi3g0544 590 SUPERFAMILY alpha/beta-Hydrolases 335 586 IPR029058 -
Vvi3g0544 590 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 142 IPR026992 -
Vvi3g0544 590 Pfam 2OG-Fe(II) oxygenase superfamily 189 288 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0544 Vvi-Chr3 4768405 4771888 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0544 10 309 Glycosyltransferase AT5G59530 34.591 3.18e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0544 - - vvi:100247063 653.284