Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0541 ATGGGAGAGGTCAATCCAGCCTTCATCCAAGACGCCCAACATAGGCCTAAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTCATTGATCTCTCTTCCGCCAATGCTTCCAATCATGTTTCTCAAATAGCTGATGCATGCAAGAACTGGGGCTTTTTTCAAGTCATCAACCATGGGGTGCCCTTGGAGTCTCGCCGGAAAATTTGGGATGCCGCGAGGACGTTCTTCGCTCTGCCAGTGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTTTTGGGTACTTTGATACTGAGCATACCAAGAACGTTAGGGACTGGAAAGAAGTCTTTGATTTCGTGGTGAGAACCCCCGCCTTCGGCCCTGCTTCGGATGATCCTGAGGACAAGGAGCTCATAGAGCTGACCAATCGGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTCTGTGAAGAATATGCGAGAGAAACGGAAAAACTAGCTTTCAAGCTGATGGGACTCATCTCTCTGAGCTTAGGTTTGCCAGAAAACAGATTCAATCTTTTCTTTGAAGAATCAACGAGCTTCGTCCGCTTCAATCACTACCCACCTTGCCCTGTCCCTCACCTAGCTCTGGGCGTTGGTCACCACAAGGATGCCGGAGCCTTAACCATCCTTGCCCAGGATGATGTCGGAGGGTTGGAAGTAAAGCGAAAAACCGACGGAGAATGGGTTCGAGTGAAGCCCACCCCAGATGCTTAA 744 0.5054 MGEVNPAFIQDAQHRPKLAVIEAEGIPLIDLSSANASNHVSQIADACKNWGFFQVINHGVPLESRRKIWDAARTFFALPVEEKRKVSRDEVNPFGYFDTEHTKNVRDWKEVFDFVVRTPAFGPASDDPEDKELIELTNRWPQYPPELREVCEEYARETEKLAFKLMGLISLSLGLPENRFNLFFEESTSFVRFNHYPPCPVPHLALGVGHHKDAGALTILAQDDVGGLEVKRKTDGEWVRVKPTPDA* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0541 247 SUPERFAMILY Clavaminate synthase-like 3 247 - -
Vvi3g0541 247 FunFam Gibberellin 20 oxidase 1 1 247 - -
Vvi3g0541 247 Pfam 2OG-Fe(II) oxygenase superfamily 190 246 IPR044861 -
Vvi3g0541 247 Gene3D - 1 247 IPR027443 -
Vvi3g0541 247 PRINTS Isopenicillin N synthase signature 43 60 - -
Vvi3g0541 247 PRINTS Isopenicillin N synthase signature 211 232 - -
Vvi3g0541 247 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 23 247 - -
Vvi3g0541 247 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 142 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0541 Vvi-Chr3 4733147 4733971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0541 10 247 Glycosyltransferase AT5G59530 32.669 1.20e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0541 - - vvi:100248570 481.485