Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0540 ATGGGAGAGGTCGATCCAGCCTTCATCCAAGACACCCAACATAGGCCTAAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTCATTGATCTCTCTTCCGCCAATGCTTCCAACCATGTTTCTCAAATAGCTGACGCATCCAAGAATTGGGGCTTCTTTCAAGTCATCAACCATGGGGTGCCCTCGGAGTCTCGCCGGAAAATTGAGGGTGCGGCGAGGAAATTCTTCGCTCTGCCATTGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTTTGGGGTATTTTGATTCGGAGCTTACCAAGAACGTTAGGGACTGGAAGGAAGTCTTTGATTTCGTGGTGTCAACCCCCACCGTGATCCCTGTTTCGCCTGATCCTGACGACAAGGAGCTCAAAGAGCTGACCAATCAGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTATGTGAAGAATATGCTAGAGAAATGGAAAAACTAGCTTTCAAGATGTTGGGACTCATCTCTCTGAGCTTAGGTTTGCCGGAAAACAGATTCAATCTTTTCTTTGAAGAATCAACTACCTTCATCCGCCTCAATCACTACCCACCATGCCCCATCCCTCACCTAGCTCTGGGTGTTCGTTGCCAAAAGGATGCCGAAGCCTTAACCATCCTTGCCCAGGATGATGTCAGAGGGTTGGAAGTAAAGCAAAAAACTGATGGAGAATGGATTCGAGTTAAGCCCACCCTAGATGCATATATCATCAATGTTGGGGATATAATTCAAGTATGGAGCAACGATACTTATGAGAGTGTGGAGCATAGGGTGATGGTGAATTCAGAGAGGGAAAGGTTTTTGATTCCGTTCTTTTTCAATCCCGAACACCGTGTTTGGGTGCAACCCTTGGAGGAGATGACAAAGGGGGAAAAGCCAAAGTACACAACTTGGGAAAATTCTTTACTACGAGAAAGCACAATAATTTCAAGAAGCTTGATGTAG 984 0.4685 MGEVDPAFIQDTQHRPKLAVIEAEGIPLIDLSSANASNHVSQIADASKNWGFFQVINHGVPSESRRKIEGAARKFFALPLEEKRKVSRDEVNPLGYFDSELTKNVRDWKEVFDFVVSTPTVIPVSPDPDDKELKELTNQWPQYPPELREVCEEYAREMEKLAFKMLGLISLSLGLPENRFNLFFEESTTFIRLNHYPPCPIPHLALGVRCQKDAEALTILAQDDVRGLEVKQKTDGEWIRVKPTLDAYIINVGDIIQVWSNDTYESVEHRVMVNSERERFLIPFFFNPEHRVWVQPLEEMTKGEKPKYTTWENSLLRESTIISRSLM* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0540 327 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 26 307 - -
Vvi3g0540 327 Pfam 2OG-Fe(II) oxygenase superfamily 191 288 IPR044861 -
Vvi3g0540 327 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 142 IPR026992 -
Vvi3g0540 327 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 288 IPR005123 -
Vvi3g0540 327 FunFam Gibberellin 20 oxidase 1 1 320 - -
Vvi3g0540 327 Coils Coil 326 327 - -
Vvi3g0540 327 Gene3D - 1 319 IPR027443 -
Vvi3g0540 327 SUPERFAMILY Clavaminate synthase-like 3 308 - -
Vvi3g0540 327 PRINTS Isopenicillin N synthase signature 211 232 - -
Vvi3g0540 327 PRINTS Isopenicillin N synthase signature 43 60 - -
Vvi3g0540 327 PRINTS Isopenicillin N synthase signature 276 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0540 Vvi-Chr3 4712378 4725151 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0540 10 318 Glycosyltransferase AT5G59530 31.173 1.30e-41 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0540 - - vvi:100265761 588.956