Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0537 ATGGCAGCAGATTTATGGTTAGGAATAAGGGAAATAGTGCCACAGAAATGCAGACTGTATGGGAGGTCTCTGGGCGTTGGTCGCCACAAGGATTCCGGAGCCTTAACTTTCCTTGCTCAGGATGATGTTGGAGGGTTGGAAGTAAATCGAAAAACCGATGGAGAATGGGTTCGAGTTAAGCCCACCCCAGATGCTTATATCATCAATGTTGGGGATATAGTTCAGGTCTGGAGCAACGATACTTATGAAAGTGTGGAGCACAGGGTGATGGAGAATTCAGAGAGGTAA 288 0.4653 MAADLWLGIREIVPQKCRLYGRSLGVGRHKDSGALTFLAQDDVGGLEVNRKTDGEWVRVKPTPDAYIINVGDIVQVWSNDTYESVEHRVMENSER* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0537 95 Gene3D - 12 95 IPR027443 -
Vvi3g0537 95 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 10 95 IPR005123 -
Vvi3g0537 95 Pfam 2OG-Fe(II) oxygenase superfamily 23 93 IPR044861 -
Vvi3g0537 95 SUPERFAMILY Clavaminate synthase-like 21 94 - -
Vvi3g0537 95 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 22 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0537 Vvi-Chr3 4701996 4707486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0537 23 93 Glycosyltransferase AT5G59530 45.070 1.23e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0537 - - vvi:100263992 147.517