Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0536 ATGGGAGAGGTCGATCCAGCCTTCGTCCAAGACGCCCAACATAGGCCTAAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTCATTGATCTCTCTTCCGCCAATGCTTCCAATCATGTTTCTCAAATAGCTGATGCATGCAAGAACTGGGGCTTTTTTCAAGTCATCAACCATGGGGTGCCCTCGGAGTCTCGCCGGAAAATTTTGGATGCCGCGAGGAAGTTCTTCGCTCTGCCAGCGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTATGGGGTACTTTGATATTGAGCATACCAAGAACGTTAGGGACTGGAAAGAAGTCTTTGATTTCGTGGTGAGAACCCTCGCCTTCGGCCCTGCTTCGGATGATCCTGACGACAAGGAGCTCATAGAGCTGACCAATCGGTGGCCTCAGTACCCTCCTGAATTAAGGGAGATCTGTGAAGAATATGCTAGAGAAACGGAAAAACTAGCTTTCAAGCTGATGGGACTCATCTCTCTGAGCTTAGGTTTGCCAGAAAACAGATTCAATCTTTTCTTTGAAGAATCAACGAGCTTCGTCCGCCTCAATCACTACCCACCTTGCCCTGTCCCTCACCTAGCTCTGGGCGTTGGTCGCCACAAGGATCCCGGAGCCTTAACCATCCTTGGCCAGGATGATGTCGGAGGGTTGGAAGTAAAGCGAAAAACCGATGGAGAATGGATTCGAGTGAAGCCCACCCCAGATGCTTATATCATCAATGTTGGGGATATAATTCAGGTTTGGAGCAACGACACTTATGAGAGTGTAGAGCACAGAGTGATACTGAATTCAGAGAGGGAAAGGTTCTCGATTCCGTTTTTTTCCAATCCCGCGCACCATCTTTGGGTGCAGCCGTTGGAGGAGCTGACGAAGGGGGGAAAACCAAAGTATAGAGCATACAACTGGGGAAAGTTCTTTGCTACGAGAAAGCGCAGTAATCTCAAGAAGCTTGATGTGGAAAACCTCCAAATTTCTCATTTCAAGGCATCGGAGTAA 1029 0.4888 MGEVDPAFVQDAQHRPKLAVIEAEGIPLIDLSSANASNHVSQIADACKNWGFFQVINHGVPSESRRKILDAARKFFALPAEEKRKVSRDEVNPMGYFDIEHTKNVRDWKEVFDFVVRTLAFGPASDDPDDKELIELTNRWPQYPPELREICEEYARETEKLAFKLMGLISLSLGLPENRFNLFFEESTSFVRLNHYPPCPVPHLALGVGRHKDPGALTILGQDDVGGLEVKRKTDGEWIRVKPTPDAYIINVGDIIQVWSNDTYESVEHRVILNSERERFSIPFFSNPAHHLWVQPLEELTKGGKPKYRAYNWGKFFATRKRSNLKKLDVENLQISHFKASE* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0536 342 SUPERFAMILY Clavaminate synthase-like 3 325 - -
Vvi3g0536 342 Gene3D - 1 326 IPR027443 -
Vvi3g0536 342 Pfam non-haem dioxygenase in morphine synthesis N-terminal 26 142 IPR026992 -
Vvi3g0536 342 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 26 316 - -
Vvi3g0536 342 Pfam 2OG-Fe(II) oxygenase superfamily 189 288 IPR044861 -
Vvi3g0536 342 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 187 288 IPR005123 -
Vvi3g0536 342 PRINTS Isopenicillin N synthase signature 211 232 - -
Vvi3g0536 342 PRINTS Isopenicillin N synthase signature 276 294 - -
Vvi3g0536 342 PRINTS Isopenicillin N synthase signature 43 60 - -
Vvi3g0536 342 FunFam Gibberellin 20 oxidase 1 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0536 Vvi-Chr3 4691827 4693030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0536 10 309 Glycosyltransferase AT5G59530 33.123 3.29e-42 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0536 - - vvi:100248570 706.057