Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0535 ATGGGAGAGGTCGATCCAGCCTTCATCCAAGACACCCAACATAGGCCTAAGCTCGCTGTTATCGAAGCTGAAGGCATCCCCCTTGTTGGGACGTGCAGCACAGATGGTACCAGGAGGGCAACCTTATCGTCCTTAAGTCTTGGACTTGGGTTTGAATCCTGGGGAGGCCACTCTGTGACGCCCTTGACTGGCACAGAGCCAAATATACTCAAAACAAATGACGTCCCAACACCCCTCATTGATCTCTCTTCCGCCAATGCTTCCAACCATGTTTCTCAAATAGCTGATGCATCCAAGAATTGGGGCTTCTTTCAAGTAATCAACCATGGGGTGCCCTCGGAGTCTCGCCGGAAAATTGAGGATGCGGCTAGAAAATTCTTCGCTCTGCCATTGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTTTGGGGTATTTTGATTCCGAGCTTACCAAGAACGTTAGGGACTGGAAGGAAGTCTTTGATTTCGTGGTATCAACCCCCACCGTGATCCCTGTTTCGCCTGATCCTGACGACAAGGAGCTCAAAGAGCTGACCAATCAGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTATGTGAAGAGTATGCTAGAGAAATGGAAAAATTAGCTTTCAAGCTGTTGGGACTCATCTCGTTGAGTTTAGGTTTGCCAGAAAACAGATTCAATCTTTTCTTTGAAGAATCAACGAACTTCATCCGCCTCAATCACTACCCACCTTGCCCCATCCCTCACCTAGCTCTGGGCGTTGGTCGCCACAAGGATGGCGGAGCCTTAACCATCCTTGCTCAGGATGATGTCGGAGGGTTGGAAGTAAAGCGAAAAACCGATGGAGAATGGATTCGAGTTAAGCCCACCCCAGATGCTTATATCATCAATGTTGGGGATATAATTCAGGTCTGGAGCAATGATACTTATGAAAGTGTGGAGCACAGGGTGATGGTGAATTCAGAGAGGGAAAGGTTTTCGATTCCGGTCTTTTTCAATCCCGGGCAGCATGTTTGGGTGAAGCCCTTGGAGGAGCTGACGAAAGGGGAAAAGCAAAATTACAGAGCATACAACTGGGGAAAGTTCTTTGCTGCGAGAAGGCGCAGTAATTTCAAGAAGCTTGACGTGGAAAACCTCCAAATTTCTCATTTCAAGGTATCAGAGTAA 1182 0.4805 MGEVDPAFIQDTQHRPKLAVIEAEGIPLVGTCSTDGTRRATLSSLSLGLGFESWGGHSVTPLTGTEPNILKTNDVPTPLIDLSSANASNHVSQIADASKNWGFFQVINHGVPSESRRKIEDAARKFFALPLEEKRKVSRDEVNPLGYFDSELTKNVRDWKEVFDFVVSTPTVIPVSPDPDDKELKELTNQWPQYPPELREVCEEYAREMEKLAFKLLGLISLSLGLPENRFNLFFEESTNFIRLNHYPPCPIPHLALGVGRHKDGGALTILAQDDVGGLEVKRKTDGEWIRVKPTPDAYIINVGDIIQVWSNDTYESVEHRVMVNSERERFSIPVFFNPGQHVWVKPLEELTKGEKQNYRAYNWGKFFAARRRSNFKKLDVENLQISHFKVSE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0535 393 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 238 339 IPR005123 -
Vvi3g0535 393 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 78 367 - -
Vvi3g0535 393 PRINTS Isopenicillin N synthase signature 262 283 - -
Vvi3g0535 393 PRINTS Isopenicillin N synthase signature 94 111 - -
Vvi3g0535 393 PRINTS Isopenicillin N synthase signature 327 345 - -
Vvi3g0535 393 SUPERFAMILY Clavaminate synthase-like 54 376 - -
Vvi3g0535 393 Gene3D - 59 377 IPR027443 -
Vvi3g0535 393 Pfam 2OG-Fe(II) oxygenase superfamily 240 339 IPR044861 -
Vvi3g0535 393 Pfam non-haem dioxygenase in morphine synthesis N-terminal 78 193 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0535 Vvi-Chr3 4675263 4676619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0535 72 367 Glycosyltransferase AT5G59530 31.861 2.65e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0535 - - vvi:100253819 659.833