Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0533 ATGCAAGAACTAGGGCTTTTTTCAATGGAGGAGAAGAGGAAGGTGAGTAGAGATGAGGTGAATCCTTTTGGGTACTTTGATACTGAGCATACCAAGAACGTTAGGGACTGGAAAGAAGTCTTTGATTTCGTGGTGAGAACCCCCGCCTTCGGCCCTGCTTCGGATGATCCTGACGACAAGGAGCTCATAGAGCTGACCAATCGGTGGCCTCAGTACCCTCCTGAATTAAGGGAGGTCTGTGAAGAATATGCGAGAGAAACGGAAAAACTAGCTTTCAAGCTGATGGGACTCATCTCTCTGAGCTTAGGTTTGCCAGAAAACAGATTCAATCTTTTCTTTGAAGAATCAACGAGCTCCGTCCGCTTCAATCACTACCCACCTTGCCCTGTCCCTCACCTAGCTCTGGGCGTTGGTCACCACAAGGATGTCGGAGCCTTAACCATCCTTGCCCAGGATGATGTCGGAGGGTTGGAAGTAAAGCGAAAAACCGATGGAGAATGGGTTCGAGTGAAGCCCACCCCAGATGCTTATATCATCAATGTTGGGGATATAATTCAGGCTTGGAGCAACGACACTTATGAGAGTGTGGAGCACAGAGTGATACTGAATTCAGAGAGGGAAAGGTTCTCGATTCCGTTCTTTTTCAATCCCGCGCACCATCTTTGGGTGCAGCCCTTGGAGGAGCTGACGAAAGGGGAAAAACCAAAGTATAGAGCATACAACTTGGGAAAGTTCTTGGCTACGAAAAAGCGCAGTAATCTTAAGAAGCTTGGTGTGGAAAACCTCCAAATTTCTCATTTCAAGGTATCAGAGTAA 816 0.473 MQELGLFSMEEKRKVSRDEVNPFGYFDTEHTKNVRDWKEVFDFVVRTPAFGPASDDPDDKELIELTNRWPQYPPELREVCEEYARETEKLAFKLMGLISLSLGLPENRFNLFFEESTSSVRFNHYPPCPVPHLALGVGHHKDVGALTILAQDDVGGLEVKRKTDGEWVRVKPTPDAYIINVGDIIQAWSNDTYESVEHRVILNSERERFSIPFFFNPAHHLWVQPLEELTKGEKPKYRAYNLGKFLATKKRSNLKKLGVENLQISHFKVSE* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0533 271 Gene3D - 2 255 IPR027443 -
Vvi3g0533 271 FunFam Gibberellin 20 oxidase 1 1 255 - -
Vvi3g0533 271 Pfam non-haem dioxygenase in morphine synthesis N-terminal 8 71 IPR026992 -
Vvi3g0533 271 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 7 241 - -
Vvi3g0533 271 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 116 217 IPR005123 -
Vvi3g0533 271 Pfam 2OG-Fe(II) oxygenase superfamily 119 217 IPR044861 -
Vvi3g0533 271 SUPERFAMILY Clavaminate synthase-like 8 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0533 Vvi-Chr3 4651755 4652826 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0533 24 245 Glycosyltransferase AT5G59530 32.051 1.71e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0533 - - vvi:100248570 508.064