Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0525 ATGTCAATTGACTCCATATTAATATACAAGAAGTTAAAGAAGGAGAAAAGGTCTGACAAGGTAGTAATAGATGTCAAGAAAAGAGGTGGATATAACAAGTTATGCAGCCTTTCTCCCCAACTTCAAAAAATTGTTGGAGCTGCTGAATTGACCGGGCCTCAGGTTGTAAAGAAATTTTGGACATATATCCAGGAGAACAGCTTACAAGATCCAAAGAACAATAGAAATATAATCTGTGATGAATCATTGCAGGAGCTGTTTCACGTCGATTCTATCAACATGTTTGAAATGAACAAAGTCTTGTCAAAGCATGTTTGGCAACTAAATGTTGAAGATGGTATTTCTTTGAACAAAACTAAAATTTTTTTAACAATTTAA 378 0.3386 MSIDSILIYKKLKKEKRSDKVVIDVKKRGGYNKLCSLSPQLQKIVGAAELTGPQVVKKFWTYIQENSLQDPKNNRNIICDESLQELFHVDSINMFEMNKVLSKHVWQLNVEDGISLNKTKIFLTI* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0525 125 SMART swib_2 31 110 IPR019835 -
Vvi3g0525 125 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 14 110 - -
Vvi3g0525 125 Pfam SWIB/MDM2 domain 34 105 IPR003121 -
Vvi3g0525 125 CDD SWIB-MDM2_like 35 105 - -
Vvi3g0525 125 ProSiteProfiles SWIB/MDM2 domain profile. 30 107 IPR003121 -
Vvi3g0525 125 FunFam Upstream activation factor subunit 25 113 - -
Vvi3g0525 125 SUPERFAMILY SWIB/MDM2 domain 26 108 IPR036885 -
Vvi3g0525 125 Gene3D SWIB/MDM2 domain 24 112 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0525 Vvi-Chr3 4502406 4509862 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vvi3g0525 SWIB 4.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0525 K15223 - vvi:109122344 211.46