Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0523 ATGGTGAATCAAGAAACCGCAGAAATGGAGAAGAAGGAGAGCAGCACCACAACCAGTGCTGCTGCTTCCTTCAAATTCAATGCCCAGGCACCTGAATTCGTGCCAAGATCACATACCCAGGTCCCCATTTCTGGTTATTTCTATCCATGTTTCCACTTGCTTGGTGGGGGTGCTGGCTCTGCAGATTGGTTGTATGTTGCGGATCAAGACCCTGTCCATTTCATTTCTAATTCCAATGGCTCTCTACCCAATTCTTCCAAGAATCTTCTCACCCATGATATTCAGCAAAAGATCATCAAACAGGTAGAGTACCAATTCAATGACATGAGTTTGCTTGCAAGTGACTCCTTGGCAAAACACATAAACAAAGATCCTGAAGGCTATGTTCCAATATCTGTTATTGCATCTTCTAAGAAAGTCAAGGCCCTTGTGAGTAATAACCAATTGCTTGCTCAAGCACTTCGCTCCTCTTCACAGCTTGTTGTAAGCAGTGATGGGAAGAAGGTTAGACGAAAGCACCTTTTCACTGAAAGAGACAAAGAGGAATTGCAGGCTCATACTGTGGTGGCAGAGAATCTACCTGAAGATCATTCTCATCAAAACCTCCAGAAAATATTCAGTGTTGTTGGAAGTGTGAAAAACATCCGAATATGTCATCCTCAGGAATCCAATAATTCCCGTTCCAAGGGTGACTTTTTTATCAGTAACAAGCTCCATGCACTCGTGGAATATGAATCTGTGGAGATAGCTGAGAAAGCAGTTGAGATGTTAAATGATGAAAGGAACTGGAGAAAGGGCCTCCGAGTAAGGATGCTGCTCAGACGCTCGCCAAAGTCTGTTTTAAAGAACAGGAGGTCAGAATTTGATGGGATTATGGATGAAGAAGAGGGACCACATCCTGAATTTTCAGAAGACTCCTCTCATCCTAATAATACAGAATTGGTTATTGAGAGTAATGCTGAAGAAAATTCAAGTGGATCAAAGAAAGGATGGGCACGAGGACGTGGGAAACCACGAGGACGAACTCAGATTACCTCTGGGAGGGGCCTGCTCGCTCCATCCCCACAATCAAGTGGCTCCAACCAGTTCGAAGCATCTGCCAAACAGATTACCAAGGGACCAAGAATGCCAGACGGGACAAGGGGCTTCACCATGGGACGAGGGAAGCCAATAAGTACTCCAGCTCTAGCAAGTCCACTCCTGGGGTGA 1209 0.4508 MVNQETAEMEKKESSTTTSAAASFKFNAQAPEFVPRSHTQVPISGYFYPCFHLLGGGAGSADWLYVADQDPVHFISNSNGSLPNSSKNLLTHDIQQKIIKQVEYQFNDMSLLASDSLAKHINKDPEGYVPISVIASSKKVKALVSNNQLLAQALRSSSQLVVSSDGKKVRRKHLFTERDKEELQAHTVVAENLPEDHSHQNLQKIFSVVGSVKNIRICHPQESNNSRSKGDFFISNKLHALVEYESVEIAEKAVEMLNDERNWRKGLRVRMLLRRSPKSVLKNRRSEFDGIMDEEEGPHPEFSEDSSHPNNTELVIESNAEENSSGSKKGWARGRGKPRGRTQITSGRGLLAPSPQSSGSNQFEASAKQITKGPRMPDGTRGFTMGRGKPISTPALASPLLG* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0523 402 SMART rrm1_1 187 270 IPR000504 GO:0003723
Vvi3g0523 402 MobiDBLite consensus disorder prediction 304 326 - -
Vvi3g0523 402 PANTHER LUPUS LA PROTEIN-RELATED 15 367 IPR045180 -
Vvi3g0523 402 MobiDBLite consensus disorder prediction 285 303 - -
Vvi3g0523 402 PRINTS Lupus La protein signature 158 171 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi3g0523 402 PRINTS Lupus La protein signature 180 196 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi3g0523 402 PRINTS Lupus La protein signature 101 118 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi3g0523 402 PRINTS Lupus La protein signature 127 142 IPR002344 GO:0003723|GO:0005634|GO:0006396|GO:1990904
Vvi3g0523 402 MobiDBLite consensus disorder prediction 347 368 - -
Vvi3g0523 402 SUPERFAMILY RNA-binding domain, RBD 179 283 IPR035979 GO:0003676
Vvi3g0523 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 259 IPR000504 GO:0003723
Vvi3g0523 402 Gene3D - 83 176 IPR036388 -
Vvi3g0523 402 Gene3D - 177 279 IPR012677 -
Vvi3g0523 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 276 IPR000504 GO:0003723
Vvi3g0523 402 MobiDBLite consensus disorder prediction 285 402 - -
Vvi3g0523 402 Pfam Ataxin-2 C-terminal region 21 38 IPR009818 -
Vvi3g0523 402 SMART la 92 172 IPR006630 -
Vvi3g0523 402 SUPERFAMILY "Winged helix" DNA-binding domain 89 181 IPR036390 -
Vvi3g0523 402 CDD RRM_La_like_plant 187 273 IPR034878 GO:0003723
Vvi3g0523 402 ProSiteProfiles La-type HTH domain profile. 88 179 IPR006630 -
Vvi3g0523 402 ProSiteProfiles SUZ-C domain profile. 340 387 IPR024642 -
Vvi3g0523 402 Pfam La domain 98 155 IPR006630 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0523 Vvi-Chr3 4481840 4484748 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0523 K15191 - vvi:100241743 779.245