Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0512 ATGCTCCTCCCGAAATCCTACCACAGACCCAATCTTCCAGAACTCGTCTCCTCCAAAGCCCGATTCTCTTCTCTTTCTTCTACTTCCCATGCCCTTCTTGTAGACAAAGCCATCACTCTTCTCAAATTCCACCCCCATCACCTCGATTCCTTATCCTCCCGTTTCACCCCTCAATCCGCTTCATATTTCCTACTCAAGTCCCAATTCGACCAAACCCTAACCCTAAAATTCCTCACCTGGGCTCGGAACCACCCTTTCTTCGATTCCCATTGCAAATGCCTCTCTCTCCACATTCTCACCCGCTTCAAGCTCTACAAAACTGCCCAAACCCTGGCCCAAGAACTCGCCCTCAGTGCCAGCGACCCCTCCGGTTCTTCCATTTTTCAGTGCCTTAAAGATTCTTACCATGTCTACAATTCGAGTTCTGCGGTGTTCGATCTCATGGTGAAGTCCTATTCTCACTTGAACATGATTGATCAGGCTGTGAATACTATTAATTTAGCAAAATCCAGTGGGTTTATGCCTGGTGTTTTGTCGTATAATTCGGTTCTTGATGCAATTGTTAGGTCTCGGGGTTCAGTTAAATTGAGTGCTGAGGAGGTGTATAGAGAGATGATTAGGAGTAGGGTTTCACCAAATGTGTATACCTATAACATCTTGATTCGCGGATTTTGCAGTGTAGGGGAATTGCAGAAGGGTTTGGGTTGCTTTGGTGAAATGGAGAGAAATGGGTGTTTGCCGAATGTGGTTACTTATAATACCTTAATTGATGCATATTGCAAAATGGGGAGGATTGATGAAGCATTTGGGTTGTTAAAGTCAATGTCTTCGAAGGGTATGCAGCCAAATTTGATTTCATACAATGTTATCATTAATGGGTTGTGTCGAGAAGGGAGTATGAAGGAAGCATGGGAGATTCTTGAGGAGATGGGTTATAAGGGTTTTACTCCAGATGAGGTGACTTATAATACGCTCCTGAATGGGTATTGTAAGGAGGGTAATTTTCATCAAGCGCTTGTTATTCATGCGGAGATGGTGAGGAATGGTGTCTCTCCAAGCGTTGTTACTTACACTGCATTGATTAATAGTATGTGTAAGGCTCGAAATTTGAATCGAGCAATGGAGTTCTTTGATCAGATGCGCATTAGAGGGCTTCGTCCTAATGAGAGAACATATACAACCTTGATTGATGGGTTCTCCCGGCAGGGGCTTTTGAATGAAGCTTATCGGATTTTAAATGAGATGACTGAGAGTGGATTCTCACCTTCAGTTGTGACTTATAATGCATTCATCCATGGGCACTGTGTCTTGGAAAGAATGGAGGAGGCTCTAGGAGTGGTTCAGGAAATGGTGGAGAAAGGGTTGGCCCCTGATGTAGTAAGTTATAGTACAATTATATCTGGATTTTGTAGAAAAGGAGAGTTGGATAGAGCATTCCAAATGAAGCAGGAGATGGTGGAGAAGGGTGTGTCGCCAGATGCTGTTACATATTCATCACTCATTCAAGGTCTCTGTGAGATGAGGAGACTAACGGAAGCCTGTGATCTTTCCCAAGAGATGTTGGACATGGGCCTGCCTCCAGATGAATTTACATATACAACGCTGATCAACGCATATTGTGTAGAAGGAGATCTAAATAAGGCTCTTCATTTACATGATGAAATGATACATAAGGGCTTCCTTCCTGATGCTGTTACCTACAGTGTGCTTATTAATGGACTTAATAAACAAGCTCGCACAAGGGAAGCAAAGCGGCTTCTCTTCAAGTTGATTTATGAGGAGTCTGTTCCAAGTGATGTCACATATGACACACTGATAGAGAATTGCAGTAATATTGAATTCAAGAGCGTGGTGGCTCTCATTAAGGGATTTTGTATGAAGGGGTTAATGCATGAAGCAGATCGAGTTTTTGAATCTATGGTTGAGAGAAACCACAAACCTGGTGAGGCAGTTTATAATGTTATTATACATGGTCATTGTAGGGGTGGAAATTTGCCAAAGGCATTTAATTTATACAAGGAAATGATTCATTCTGGGTTTGTCCCTCATACTGTGACTGTCATCACTCTGATTAAAGCACTTTTCAAGGAGGGAATGAATGAGGAGATGAGTGAAGTCATAGGCGACACATTGAGAAGCTGTAGACTGAATGAGGCTGAGCTTGCAAAAGTTCTTGTTGAGATTAACCATAAAGAAGGGAACATGGAAGCAGTTCTTAATGTGCTTACTGACATGGCTAAGGATGGCCTCCTTCCAAATAGTGGGAAAACTGCCTATGCTGGGGGATAA 2289 0.4281 MLLPKSYHRPNLPELVSSKARFSSLSSTSHALLVDKAITLLKFHPHHLDSLSSRFTPQSASYFLLKSQFDQTLTLKFLTWARNHPFFDSHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCLKDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNEEMSEVIGDTLRSCRLNEAELAKVLVEINHKEGNMEAVLNVLTDMAKDGLLPNSGKTAYAGG* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0512 762 SUPERFAMILY HCP-like 256 587 - -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 212 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 563 597 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 285 319 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 530 564 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 619 648 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 391 424 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 495 529 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 425 459 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 320 354 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 460 494 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 355 389 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 215 249 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 250 283 IPR002885 -
Vvi3g0512 762 NCBIfam pentatricopeptide repeat 651 682 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 648 682 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat 619 644 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 530 575 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 457 505 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 648 696 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 317 366 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 391 435 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 175 226 IPR002885 -
Vvi3g0512 762 Pfam PPR repeat family 247 296 IPR002885 -
Vvi3g0512 762 PANTHER OS03G0856100 PROTEIN 618 754 - -
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 558 615 IPR011990 GO:0005515
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 480 557 IPR011990 GO:0005515
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 263 367 IPR011990 GO:0005515
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 108 262 IPR011990 GO:0005515
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 368 474 IPR011990 GO:0005515
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Vvi3g0512 762 FunFam Pentatricopeptide repeat-containing protein At5g39710 196 302 - -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Vvi3g0512 762 Gene3D Tetratricopeptide repeat domain 616 737 IPR011990 GO:0005515
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 613 647 IPR002885 -
Vvi3g0512 762 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0512 Vvi-Chr3 4365445 4367733 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0512 9 758 Glycosyltransferase AT1G05670 28.327 1.01e-103 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0512 - - vvi:100855388 1524.61