Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0509 ATGCTCATCGGCAGAGCACAAGAGCTCTCATCTTCCACTCTCACCATAACCACCGCTTTCTCCTCGAGCCCTAACCCTAACTATACTTTTTCCCTTCCCATGCGCACACCCGTCCTTTCTTCACTCTCTCTTCTCCGCTCCCTCTCCCCCTCTCTCCACCACCGCTTCCTGTGCTCCCTCTCCCTCTCCAACTACTCGAAATCCTTTTTCTTCCCATTACCCACTACTAATATCCGTCATTCATCTCTATTTCGGCGGCCCCCATTGGCGAAGCCGCTGAGTAGTTTTGTCGAACAGGTGGTAGGTGAATCGGAGAGGGACGAGAATGAGGGTTTTTCTCGCGGAGGGGAGGGCGAGAGTTTCGACTTCGGGGTTGCTTTTGGTTCCACTGATTTGAGGCACTTGAGTTCGCCTTCTTTAGAGGTTAAGGAGCTGGAGGAGCTGCCGGAGCAGTGGAGGAGGTCGAAGTTGGCTTGGCTGTGCAAGGAACTGCCGGCGCACAAGCCTGCGACTTTGATTCGGATACTGAATGCACAGAAGAAGTGGGTTAGGCAGGAGGATGCGACTTATATTGCGGTGCATTGTATGCGGATTCGTGAGAATGAAACTGGATTTAGAGTGTACAAATGGATGATGCAACAACATTGGTTTCAATTTGATTTTGCTCTTGCTACTAAGCTAGCAGATTATATGGGGAAGGAGCGGAAGTTTTCAAAATGTCGGGAGATATTTGATGACATAATTAAGCAGGGACTTGTGCCATGTGAATCTACATTTCATATTCTAATCATTGCCTATCTTAGTGCATCAGTACAAGGCTGCCTGGATGAAGCATGTGGCATTTACAATCGTATGATTCAGTTGGGAGGTTACCAGCCCCGGCTTAGCTTGCACAATTCTCTCTTCCGGGCTCTTGTTGGCCAACCAGGAGGCTCTTCAAAATACTTTCTCAAACAGGCGGAGTTCATTTTCCATAACTTGGTGACATTTGGATTCGAGATACACAAAGATGTTTATGGTGGCCTAATTTGGCTACATAGCTATCAGGATACCATAGATAGAGAAAGGATAGCATCACTAAGGGAAGAGATGCAATTAGCAGGAATTGAAGAAAGCAGAGATGTGCTTTTGTCCATCTTGAGAGCTTGCTCGAAGGAAGGAGACGTGGAAGAAGCTGAAAAAACTTGGCTCAAACTCCTCCATTCTGATTGTGCTATTCCTTCTCAGGGTTTTGTGTACAGAATGGAAGTCTATGCAAAGGTAGGGGAGCCTATGAAATCTTTGGAGATATTCAGGGAGATGCAAGAGCAGTTGGGCTCCACCAGTGTTGTGGCATATCATAAAATCATAGAGGTGTTATCTAAAGCTCAAGAAATTGAACTTGTAGAGTCTCTTATGACAGAGTTCATAAACAGTGGGATGAAACCCCTCATGCCATCCTATATTGATCTAATGAATATGTATTTCAATTTAAGCTTGCATGATAAATTGGAGGCAGCCTTCTACGAGTGCCTGGAGAAATGTCGTCCAAATAGAGCTATTTACAATATTTACATGGATTCTTTGGTACAAATTGGCAACCTTGATAAGGCTGAGGAGATCTTCAACCAAATGTATAGTAATGGGGCAATTGGTGTCAATACTAAATCATGCAACACTATTTTAAGTGGATATCTCTCTTGTGGAGATTACTTGAAAGCTGAAAAGATATATGATTTGATGTGCCAGAAGAAATATGCTATTGATGCTCCATTGATGGAAAAGCTTGATTATGTTCTAAGCTTGAGCAGGAAAGTTGTTAAGAGACCTGTGAGCCTGAAGCTAAGCAAAGAACAACGGGAGATTTTGATTGGTTTGCTGTTAGGTGGTTTGCAGATGGAATCGGATGAAGAGAGGAAGAATCATGTGATTTATTTTGAGTTCAATGAGAACTCTGGTGCACATTCTGTTTTGAGGAGACATATACATGAGCAGTACCATGAGTGGTTAAATTCTTCCAGTAAGCTAAGTGATGACAATGATGATGTACCATACAAATTTTCTACCATCTCACATTCTTATTTTGGTTTCTATGCGGACCAGTTCTGGCCTAGAGGTCGACCCATGATTCCAAAGTTAATCCATCGGTGGTTGTCACCACGTGTTCTTGCTTACTGGTATATGTATGGAGGCCACAGAACATCATCTGGGGACATTTTGTTAAAGCTAAAGGGAAGTCGTGAGGGTGTTGAGAAGGTCGTCAGAACATTGAAAGCACAATCAATGGATTGCCGGGTCAAGAGGAAAGGAACTGTGTTTTGGATAGGATTGCTGGGAAGTAATTCTACCTGGTTCTGGAAACTGATTGAACCATATATTCTGGATGATGTGAAAGATTTTGTCAAAGCTGGCTGCCAAAATACCATTAGCTTTGGCAGTGGGTCTGATACCGATGAAAATGCTGCCGATTACAGTGACAATGAGAATTCATAG 2472 0.4361 MLIGRAQELSSSTLTITTAFSSSPNPNYTFSLPMRTPVLSSLSLLRSLSPSLHHRFLCSLSLSNYSKSFFFPLPTTNIRHSSLFRRPPLAKPLSSFVEQVVGESERDENEGFSRGGEGESFDFGVAFGSTDLRHLSSPSLEVKELEELPEQWRRSKLAWLCKELPAHKPATLIRILNAQKKWVRQEDATYIAVHCMRIRENETGFRVYKWMMQQHWFQFDFALATKLADYMGKERKFSKCREIFDDIIKQGLVPCESTFHILIIAYLSASVQGCLDEACGIYNRMIQLGGYQPRLSLHNSLFRALVGQPGGSSKYFLKQAEFIFHNLVTFGFEIHKDVYGGLIWLHSYQDTIDRERIASLREEMQLAGIEESRDVLLSILRACSKEGDVEEAEKTWLKLLHSDCAIPSQGFVYRMEVYAKVGEPMKSLEIFREMQEQLGSTSVVAYHKIIEVLSKAQEIELVESLMTEFINSGMKPLMPSYIDLMNMYFNLSLHDKLEAAFYECLEKCRPNRAIYNIYMDSLVQIGNLDKAEEIFNQMYSNGAIGVNTKSCNTILSGYLSCGDYLKAEKIYDLMCQKKYAIDAPLMEKLDYVLSLSRKVVKRPVSLKLSKEQREILIGLLLGGLQMESDEERKNHVIYFEFNENSGAHSVLRRHIHEQYHEWLNSSSKLSDDNDDVPYKFSTISHSYFGFYADQFWPRGRPMIPKLIHRWLSPRVLAYWYMYGGHRTSSGDILLKLKGSREGVEKVVRTLKAQSMDCRVKRKGTVFWIGLLGSNSTWFWKLIEPYILDDVKDFVKAGCQNTISFGSGSDTDENAADYSDNENS* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0509 823 Gene3D Homing endonucleases 702 795 IPR027434 -
Vvi3g0509 823 SUPERFAMILY Homing endonucleases 604 789 IPR027434 -
Vvi3g0509 823 Gene3D Homing endonucleases 590 700 IPR027434 -
Vvi3g0509 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 547 581 IPR002885 -
Vvi3g0509 823 FunFam Pentatricopeptide repeat-containing protein At2g15820, chloroplastic 411 576 - -
Vvi3g0509 823 Pfam PPR repeat 378 402 IPR002885 -
Vvi3g0509 823 Pfam PPR repeat 550 577 IPR002885 -
Vvi3g0509 823 Pfam PPR repeat 416 436 IPR002885 -
Vvi3g0509 823 Pfam PPR repeat 514 542 IPR002885 -
Vvi3g0509 823 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 588 700 - -
Vvi3g0509 823 FunFam Pentatricopeptide repeat-containing protein At2g15820, chloroplastic 702 798 - -
Vvi3g0509 823 Gene3D Tetratricopeptide repeat domain 229 412 IPR011990 GO:0005515
Vvi3g0509 823 NCBIfam pentatricopeptide repeat 514 542 IPR002885 -
Vvi3g0509 823 NCBIfam pentatricopeptide repeat 550 582 IPR002885 -
Vvi3g0509 823 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Vvi3g0509 823 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 160 320 - -
Vvi3g0509 823 SUPERFAMILY HCP-like 383 580 - -
Vvi3g0509 823 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN OTP51, CHLOROPLASTIC 45 820 - -
Vvi3g0509 823 Gene3D Tetratricopeptide repeat domain 477 589 IPR011990 GO:0005515
Vvi3g0509 823 Pfam LAGLIDADG DNA endonuclease family 613 778 IPR004860 GO:0004519
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0509 317 589 Glycosyltransferase AT1G05670 22.826 1.59e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0509 - - vvi:100258959 1622.45