Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0508 ATGACTGAGTACTGGGTTAGCCAGGGTAACAAATGGTGTGACTTCTGCAAAATCTATATAGCCAACAATCCTTCTAGCATTAGAAACCATGAACTTGGTCAACGCCACAAGGATAGTGTTGCCAAGAGGCTTGCATCTATGAGAAAAGAGAATGCTGCTAAGGAGAAGGAACAAAAGGAAGCAGCCCATGCCCTTGAACAGATTGAATCAAAAGCTAAGCGTAGCTATCAGAAGGATATAGCAACTTTCCGGGAGGCCAGAGAGTCAAATGCCAATGCATTAGCTCAAGAGGATGATTCAAGTACTGCTAACGATTGGGAGCATGACAGCGCTTCAGGCTATTACTACAGTCGAAGTAATGGCATCTACTATGATCCAAATTCTGGCTTTTACTATTCTGATGCAATAGGCAAGTGGGTGACACAGGAAGAGGCATTTGCCACATCTCAAGCTTCTTCAGATTCCAAACAAAAAGGACCTGTGCTGAAAAGTCCATTCTCAGTTTCAGAGGGAACTCAAGACAGAGAAAACAAGAGTGCTGCTAAACATCAAAATGGGCCTCCACCTGGTCCTGTTGTTTCAGCATCTTTAAACCCCAGGAGATCTTCCAAATGTGCTCCATCATCAGTGGCTATTAACAAGAGGAAGAGGCAAGATGAGAAGCCAAAGGCTGTATCTAAAGAGGAAGCAGCTGCACTTAAAGCAAGGGAGGCTGCAAAGAAGAGAGTTGAAGAGAGGGAGAAATCATTGCTTGGCCTTTATGGGTCCCGTTAA 774 0.4432 MTEYWVSQGNKWCDFCKIYIANNPSSIRNHELGQRHKDSVAKRLASMRKENAAKEKEQKEAAHALEQIESKAKRSYQKDIATFREARESNANALAQEDDSSTANDWEHDSASGYYYSRSNGIYYDPNSGFYYSDAIGKWVTQEEAFATSQASSDSKQKGPVLKSPFSVSEGTQDRENKSAAKHQNGPPPGPVVSASLNPRRSSKCAPSSVAINKRKRQDEKPKAVSKEEAAALKAREAAKKRVEEREKSLLGLYGSR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0508 257 Gene3D Classic Zinc Finger 9 67 - -
Vvi3g0508 257 Pfam U1 zinc finger 11 43 IPR013085 GO:0008270
Vvi3g0508 257 Coils Coil 37 74 - -
Vvi3g0508 257 PANTHER WW DOMAIN BINDING PROTEIN 4 103 249 IPR040023 GO:0000398
Vvi3g0508 257 MobiDBLite consensus disorder prediction 213 251 - -
Vvi3g0508 257 ProSiteProfiles Zinc finger matrin-type profile. 11 42 IPR000690 GO:0003676|GO:0005634|GO:0008270
Vvi3g0508 257 SUPERFAMILY beta-beta-alpha zinc fingers 12 57 IPR036236 -
Vvi3g0508 257 Pfam OCRE domain 103 145 IPR041591 -
Vvi3g0508 257 MobiDBLite consensus disorder prediction 150 257 - -
Vvi3g0508 257 MobiDBLite consensus disorder prediction 90 110 - -
Vvi3g0508 257 SMART ZnF_U1_5 8 43 IPR003604 GO:0003676|GO:0008270
Vvi3g0508 257 MobiDBLite consensus disorder prediction 150 174 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0508 K13220 - vvi:100246948 476.092