Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0481 ATGGAGCTCAAACCAGGTCTATCAGCTCTGGTCACCGGTGGAGCCTCTGGAATTGGTAAAGCTATTAGCTTAGCTTTGGGAGAGAAGGGAATATTTGTTACAGTGGTTGACTTCTCTGAAGAAAGGGGAAAGGAAGTCGCATCCCTTGTTGAAAAAGAGAATGCCAAATTCCACCCGAAGTTGGGATTTCCATCTGCTATGTTCATAAGATGTGATGTGACTAATACAAGAGAATTGGCTGCTGCTTTCAAGAAGCATTTAGCAACATATGGAGGGTTAGACATCTGTGTAAACAGTGCGGGAATTGGTACCCATGAACCATTCCATAAGGATCAAACTGAGAACTCTGGTTTGTGGAGACGAACCATTAATGTGAACCTGGTAGCAGTTATCGACTGCACTCGCCTGGCGATTCAAACCATGCAAGCTGCGAAAAAGCCTGGTGTAATTATTAATATGGGATCTGCTTCAGGTCTTTATCCGATGTATGTTGACCCTATCTACTCTGCCTCCAAAGGTGGTGTGGTTCTATTTACCAGATCACTTGCACCTTATAAACGCCACGGAATTCGTGTCAATGTGCTTTGCCCTGAGTTTGTTCAAACTGAGATGGGCTCAAGCGTGGATTCTAAATTTATTGGTTTAATGGGTGGTTATGTGTCAATGGAAATGGTGGTGAAAGGTGCTTTTGAGCTTATAAGTGATGAGAGGAAAGCTGGATCATGTTTATGGATCACAAACAGGAGAGGAATGGAGTATTGGCCAACTCCCATTGAAGAAGCAAAATACAGGTTGCCTATTTCAAAATCAAGGAGAAAAGTCCCATTCAAAGCTTCATTGAATCTCCAAATTCCTCAGAGTTTTGAGAAAGTAGTTGTCCACACCTTGAGTCACAATTTCCGTAGTGCAACCAGCATAGTGCGTGTGCCATTGAGATTACCAATCAAACCACGCCATGTCCTTGTGAAAATAATTTATGCCGGTGTTAATGCTAGTGATGTGAACTTTAGCTCAGGCCGTTATTTTGGTGGAAATGACAAAGACCTTGGCTCGCGTCTTCCATTTGATGCTGGTTTTGAGGCTGTGGGAATAATTGCTGCTGTGGGTGATTCTGTCAATGATTTGAAAATTGGCACTCCTGCTGCAGTTATGATTTTTGGAAGTTATGCTGAATTTATGATGGTTCCTTCCAAGCACATCCTTCCCGTGGCAAGACCAGATCCAGAAGTTGTTGCGATGCTAACCTCAGGACTTACAGCATCAATTGCTTTAGAAAAGGCAGTACAAATGGAATCTGGAAAAGTAGTTCTTGTCACTGCTGCTGCTGGAGGAACTGGACAGTTCGCAGTCCAGCTTGCAAAATTAGCTGGAAATACAGTCATTGCAACTTGTGGAGGTAAGGAAAAAGCTATGCTGTTGAGAGATTTAGGAGTTGATCGAGTGATAGACTACAAAGCAGAAGATATAAAAACTGTTCTAAAAAAGGAATTTCCCAAAGGTGTTGATATTATCTATGAGTCTGTTGGTGGCGAAATGTTTAATCTTTGCTTGAATGCATTGGCAACATATGGACGACTCGTTGTGATCGGAATGATTTCTCAGTATCAAGGGGCTCGTGGATGGCAGCCTTCAAATTATACTGGGCTATGTGAGAAACTTCTAGCAAAAAGCCAAACTGTGGCTGGCTTTTTCCTGGTGCAATATGCTCACTTATGGCAAGAACATTTGGACAGGCTTTTTCATCTTTTCTCCTTGGGAAAGCTTAAGGTTGCTGTAGACCCAAAAAGATTTCTTGGCCTCCATGCTGTTGCAGATGCTGTCGAATATCTTCATTCGGGTAAAAGTGCTGGTAAGGTTATCGTTTGCATTGATCCAGCCTACAGTCAACAAACAGCAAAATTATGA 1905 0.4247 MELKPGLSALVTGGASGIGKAISLALGEKGIFVTVVDFSEERGKEVASLVEKENAKFHPKLGFPSAMFIRCDVTNTRELAAAFKKHLATYGGLDICVNSAGIGTHEPFHKDQTENSGLWRRTINVNLVAVIDCTRLAIQTMQAAKKPGVIINMGSASGLYPMYVDPIYSASKGGVVLFTRSLAPYKRHGIRVNVLCPEFVQTEMGSSVDSKFIGLMGGYVSMEMVVKGAFELISDERKAGSCLWITNRRGMEYWPTPIEEAKYRLPISKSRRKVPFKASLNLQIPQSFEKVVVHTLSHNFRSATSIVRVPLRLPIKPRHVLVKIIYAGVNASDVNFSSGRYFGGNDKDLGSRLPFDAGFEAVGIIAAVGDSVNDLKIGTPAAVMIFGSYAEFMMVPSKHILPVARPDPEVVAMLTSGLTASIALEKAVQMESGKVVLVTAAAGGTGQFAVQLAKLAGNTVIATCGGKEKAMLLRDLGVDRVIDYKAEDIKTVLKKEFPKGVDIIYESVGGEMFNLCLNALATYGRLVVIGMISQYQGARGWQPSNYTGLCEKLLAKSQTVAGFFLVQYAHLWQEHLDRLFHLFSLGKLKVAVDPKRFLGLHAVADAVEYLHSGKSAGKVIVCIDPAYSQQTAKL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0481 634 SUPERFAMILY GroES-like 298 437 IPR011032 -
Vvi3g0481 634 Pfam short chain dehydrogenase 9 209 IPR002347 -
Vvi3g0481 634 Pfam Alcohol dehydrogenase GroES-like domain 318 384 IPR013154 -
Vvi3g0481 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 409 587 IPR036291 -
Vvi3g0481 634 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Vvi3g0481 634 PRINTS Glucose/ribitol dehydrogenase family signature 188 205 IPR002347 -
Vvi3g0481 634 PRINTS Glucose/ribitol dehydrogenase family signature 91 102 IPR002347 -
Vvi3g0481 634 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vvi3g0481 634 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Vvi3g0481 634 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Vvi3g0481 634 SMART PKS_ER_names_mod 298 621 IPR020843 GO:0016491
Vvi3g0481 634 CDD ADH_SDR_c_like 9 254 - -
Vvi3g0481 634 Pfam Zinc-binding dehydrogenase 444 578 IPR013149 -
Vvi3g0481 634 Gene3D - 6 247 - -
Vvi3g0481 634 CDD Mgc45594_like 287 622 - -
Vvi3g0481 634 FunFam ARP protein (REF) 6 242 - -
Vvi3g0481 634 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 433 454 IPR002364 GO:0008270|GO:0016491
Vvi3g0481 634 FunFam Prostaglandin reductase 2 412 590 - -
Vvi3g0481 634 Gene3D - 293 621 - -
Vvi3g0481 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 IPR002347 -
Vvi3g0481 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Vvi3g0481 634 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
Vvi3g0481 634 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 256 IPR036291 -
Vvi3g0481 634 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 284 623 - -
Vvi3g0481 634 Gene3D - 412 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0481 Vvi-Chr3 4130708 4161611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0481 10 225 Acyl Lipid Metabolism Gene Families AT1G24360 33.772 3.04e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0481 - - vvi:100258817 1251.88