Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0480 ATGTTTCCGTGGAACTTCGCCAAATCGGCGGAGGAGATGTTCTCCCAGTGGGCAATCAAGCGCGTCTGCAAATTCTTGTTGAAGAAGAAATTGGGGCAGTTCATATTGGGGGACGTCGATCTCGACCAGCTCGACGTGCAGCTCAGCGCCGGCACAATTCAGCTTTCCGATGTCGCGCTCAATGTCGATTATCTTAACCAGAAGTTAGGTGCAGCAGCAGCTGTTGTTGTAAAAGAAGGATCAATTGGCTCTCTCTCAGTTAAAATGCCTTGGAAGGTTAATGGTTGTCAGATTGATGTAGATGAACTTGAGCTTGTTCTTGGCCCATGTGTGGAGAATAATTCTACAAGTGGAGATGAAACTTCTGTTCACAATCAAGTTGGTAACCATGACATCAGCCAAGACTTTCGAAAGTTTGAGAATGAGATGGTGGATAATGCTGCAACTTCTGCTTCTTTGGATGTCCATGAAGGTGTTAAGACAATTGCCAAGATGGTGAAATGGTTGCTAACAAGCTTCCATGTGAAGGTAAGAAAACTTATTGTTGCCTTTGATCCATGTTCGGAGAAGAATGAAAAGAAGACAGGGTTTCAAAAAGCCTTGGTTCTTAGAATCGATGAAACAGAATGTGGGACATGCGTTTCTGAAGATGATAATTCGAATGGCGATGCAAGGGTTGAGAGCTTTCTTGGAATAAGTCGACTAACAAACTTCATAAAATTTCAAGGAGCAATAATTGAACTTCTTCAAATTGATGATGTTGACCATCAAACATCATTTCCATGTACTTCAGGAAGCTTCAGTGAACTGCTTTCTGGGTTTTGTCCATCAAATGCTACAACTCCAATCCTGACAGGGGAAGGAGGTGGATTTTCAGGGACTGTAAAATTAAGTATGCCTTGGAAGAATGGTTCATTAGACATCCACAAAGTAGATGCGGATGTTTATATTGATCCCATAGAATTGAGATTTCAACCAAGCACAATTAACTGGTTCTTACTTTTATGGGAATCTCTTAAGAGTTTGGGTAGGGATGGGCTGGATGGCAAAGAGTGTATCCATCACAAGACAACTGAATCTGTGATACCAACTTGTGAGAGTTTTGCTGCAGACTTCTGTTCTACAACGGGGCAAGAATCGGTGACAGATATTCTGCTACCGCATCTTATATCAGATTGGGTGCCATTTTCTGTCAATGACCAGAAAGAAGAGGAGGTAGCTTTTGGGGAAAGTGTAGACCAGTTTTTTGAATGTTTTGATGGAGTGAGAAGTTACCAATCAGCTCTAGGAAACAGCGGGATATTGAACTGGACTTGTTCTGTTTTCAGTGCAATAACTGCAGCATCCAGTCTTGCATCTGGATCTTTGCATGTCCCCACCGAACAGCAGCATGTTGAAACTAATCTTAAGGCAACTATTGCTGGAATTTCTGTTGTGTTTGCCTTCCATGATGAAAATCAGAGGCATTCATGTGATCTGGGTGGTGCTCAGGCAAATGTTGGTTTGAATGTTCATTATCTTGGTGCAGAATGCAGAGACATGCTTTTTATCTTGCAGGTATCTCCTCAAAATATGAAGTTTGAAGTGACAGTGAAACATATTGAACTTGCTGATTACTTTAGGGATGAAAAGGATGTTATGGATTTTGCATTGCGCGGTTATAATAACACAACTCTTTTGGTGCAACATCTGCAAGCTGAAGTTCAAGGTGCCCTTCCTCCATTTGCCTTGTCAGCTGAAGATCCTGATATAGAAATACATAGATCTGGTTCTGCAAGTTTTAATGAGAATGATGTGGTCAAGGTTATTTTGCTTAGAACTTCAGGTGTCAGTCATTGCCTATCTACTGTAAATTCTAGTTCTGTAAATGGCAGTTTGGCAGGGACAACATCATTTTCATTGAAGCTGCCACCAATTGTTTTCTGGGTGAACTTTCAGACAATAAATGCATTATTGGATCTTTCAAAGGAATTTGAAAATTCCCTTGAAATGAATTGCAATAGAAGTTCTGGATCTTGTGATACTACCTTGTCTTCAAGAAAGAGTTTGCGAGGAAATATATTCCTGCCCAATGCAAGAGTAATTTTATGCTTTCCTTTTGAGACTGATGAAAATTCTGGATGCTACTCTTCCTGGGATCAATTTTTGGTTCTTGATTTATCTTTACCATCATCTTTGGATAAAGGAATAATTCAAGACACTTGTACAATTCCAAATGCAGACTCTCAGAATGGGTTTTCCTCAAGAGCCTCACGATCCTTGCATTTGAATGTTGGTAACCTTGACATTTACTTGGTCACTTCTTCCTGTGAAGATGGCTGTGAGATTAATTCCCGTGATGTGCAGAGGCATGGATTTTCTGCTCATAGAATTCTATCTGCTACTAACAGAACAAGCAGTTTTTCAGTCATTAGCATGCTTTGGCAGGAGAGGCCTGTGACTGGTCCTTGGATAGCAAAGAAAGCCAAGTTGTTAGTTACTTCAGAGGATTCAAGGACCAGAAATAAATTCGTGGGAAAAGGTTATGAGTTTGCTTCTGTGACTACTGTGAAAGATCTGGGAGATTTAAATTCTTGCACACGACAAGAGATGATTCTGAGTTCTGCGTTTTTCCTCCATCTCCGTCTATCACCTATTACTGTCAATCTGAGCAGTTCTCAGTACAATGATTTGCATCATCTTATAAATCAAGTGACAAATGGATTATCACGTGCAGCCTGTGATCCAGTCAGTGTTAGTGAAGAATCTTCTGTCACACAGATGTCAATCCTTGTGGAATGTGATTCAGTGGAAATTTTAATTAATCTGGATAGAGTGGAGAGTATCAAAGGTTCATTGCAGAGTGAACTACCTGGTTCATGGCATAGTCTAAAACTGAAAATTCAGAAGTTTGAGTTGCTATCTGTCTCAAATATTGGAGGAATTAAGGGTGCCAAATTTCTTTGGTTTGCCCATGGTGAAGGAAAATTATGGGGTTCTATCACGAGTGCTCCAGAGCAAGAGCTTCTTTTGATCTTGTGTAGCAACTCTACAATGAAACGTGGTGATGGAGAAGGTTTAAATAAATTATCATCTAGATTAGCTGGTTCTGATATAATACACCTCTGGGATCCAGAGAGTGTCCACAGTTATGCATCCATAACCGTCAGATGCAGCACAGTTATTGCAGTAGGTGGGCGCTTGGATTGGTTGGAGGCGATATCCTCTTTTTTCAGTTTGCCCTCTGCTGAAACTGAACAACCAGGTTACAACAGTTCCCAAAATGGGGATTTAAGTTCATCCTTTGGTTCTTCATTTTATCTTAACCTGGTGGATATTGGTTTGAGTTATGAGCCTTACTTTAAGCATTTGCTGGGCATGTGTGAACGGTATGTTGCTTGTATGTTAGCTGCATCTTCCTTGAATCTTTCTAACACAACAATGGCAGATTCCACTGATAATGAATACAAGATTAGAATACAAGATCTGGGCCTTCTTGTATGTGCGGTGTCAGAGCCTGAGAATGTTGGTGGCATTTATAGTTCAGAACGTCTTCACAAAGTTGGCTATGTCAAGGTTGCTGGGGAGGCACTTTTTGAAGCAATTTTGAGAACTAACTGCAGGAATGACCTTCTCTGGGAGTTAGAATGTTCTGAATCTCATATTCACCTGGATACTTGCCATGACACCACTTCTGGTCTCATCTGTTTGGTTTCTCAGATCCAACGGCTTTTTGCTCCTGACGTGGAGGAATCGATTATCCACTTGCAGACAAGGTGGAACAATGTTCAGCAGGCACAAGAAAGGAATGATTCCAGTGATGAAACCATGATCTTCAACAGTGATTCTGCTCCACCAGCCGCTCAAGTGCATACTTCGAGTGATGATGAGAAGACTGAACATGGGGTGTTTGCTTTGATGGATGAAATATGTGAAGATGCATTTAACTTAGGTGGACATGCAGCCTCCCAATTGGGTTCTTGTGAATCACAAATTCATATATCACTTGATGGAAGTTTTCTTGGAGAGGCGTGTAACCTTAACATTAGAACCCCTGAATTTTTCTCTCGTAATCTATCCTTCAATGGGACAGTTCCTGTAATAGGACTGGATAGTCATCAATCGTCAGTTCCACAAAATGGTGGCTTTCCCGAATTCATAGAAAGTTATTACATGTCGGAGTCAAGCCATCTGTCAGAAATATCTGCAGCCAAGGAATCTTCGCATGAGATTCTGGAATTTAAATCCAGAAATATGGGAAATGAAGATCTTGAAAGAGGAAACAGTGGATGGTATGGGGATGCCTCATTAAGAATTGTTGAAAACCATATTCCAGAAATGAGCGAGCAGGCTGGCTTGAGACAGTCTGTAAAAGGCAAGCTTCCTTCTACTGACCATAGAAGACCTGATGATCTAGGAAAGGCCAGAGGACGTGTACTCCTTAAAAATGTTAATGTCAGATGGAAAATGTTTGCTGGTTCTGACTGGAATCACCCTGGAAAGACTGGCCAGCCTTCTGCAAATATTAGTGGAAGGGATGCAGCCACATGCCTGGAGCTTGCACTATCTGGGATGGACTTTCAGTATGACATTTTTCCAGATGGAGAAATATTTGTATCTAAGCTTTCTCTCTTTATTAAGGATTTTCATCTTTATGATAACAGCAGAGATGCACCATGGAAACTGGTTCTGGGTTATTATCATTCAAAAGATCATCCTAGAGAGTCCTCTTCAAAAGCATTCAAGTTGGACTTAGAAGCTGTCAGACCAGACCCTTCAACTCCTCTTGAGGAGTATAGGTTACGGATTGCTGTTCTTCCTATTCTATTGCATCTTCATCAGGGACAACTTGATTTTCTTGTTAGCTTTTTCGGGGGAAAAAATCAGTCAGTTGACCAGTCTCCAAGTCATTGCCATGCTTCAGATGGGACAAAATTATCATCAACAAAGAATAGCAATTTTGCAAGGCATGCTATTTCAGAGGAGGCATTGCTTCCTTATTTTCAGAAGTTTGATATATGGCCTATTCTTGTGCGGGTTGACTACAGTCCCTGTCGTGTTGATCTAGCTGCGTTAAGAGCCGGGAAGTATGTAGAGCTTGTTAATCTTGTTCCCTGGAAGGGGGTTGAACTTAATCTCAAACACGTCCACGCTGTTGGTGTGTATGGATGGAGCAGTGTATGTGAAACAATTATAGGGGAATGGTTGGAAGATATTTCTCAAAATCAGATTCATAAATTGTTGCAAGGTCTTCCAACATTTCGATCATTGGTTGCTGTTAGTTCTGGTGCTGCAAAGTTTGTTTCTTTGCCTGTTAAGAACTACAAGAAGGACCGCAGACTAATCAAGGGAATGCAACGAGGCACAATTGCATTTCTTAGAAGTATTTCACTGGAAGCTGTTGGACTGGGGGTACATTTGGCAGCAGGAGCTCATGAAATCTTACTCCAAGCAGAATATATTCTTTCAAATATTCCATCTTCTGTACCATGGCCTGTAGAAAATAGAATAAATTCAAATATAAGAACTAATCAACCTAAAGATGCACAACAAGGAATCCAGCAGGCTTATGAAAGTCTCAGTGATGGTCTTGGGAGATCTGCTTCTGCTTTAGTTCAAACTCCCTTGAAAAAATATCAGCGTGGAGCTGGTGCAGGATCTGCTTTGGCAACTGCTGTTCAAGCAGCTCCGGCCGCTGCAATAGCTCCTGCTTCTGGTCTAGCCCGTGCAGTACATTGTGCTCTTCTTGGAGTCAGAAATAGCCTCGATCCCGAGCATAAAAAAGAGTCCATGGAGAAATATATGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCTGAGCATAAAAAAGAGTCCATGGAGAAATATTTGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCCGAGCGTAAAAAAGAGTCCATGGAGAAATATTTGGGTCCTGCTGGAGTCAGAAATAGCCTTGATCCCGAGCATAAAAGAGAGTCCATGGAGAAAAATTTGGGTCCTGCTGAGCCTCAGGAACAGATTTAA 6012 0.4137 MFPWNFAKSAEEMFSQWAIKRVCKFLLKKKLGQFILGDVDLDQLDVQLSAGTIQLSDVALNVDYLNQKLGAAAAVVVKEGSIGSLSVKMPWKVNGCQIDVDELELVLGPCVENNSTSGDETSVHNQVGNHDISQDFRKFENEMVDNAATSASLDVHEGVKTIAKMVKWLLTSFHVKVRKLIVAFDPCSEKNEKKTGFQKALVLRIDETECGTCVSEDDNSNGDARVESFLGISRLTNFIKFQGAIIELLQIDDVDHQTSFPCTSGSFSELLSGFCPSNATTPILTGEGGGFSGTVKLSMPWKNGSLDIHKVDADVYIDPIELRFQPSTINWFLLLWESLKSLGRDGLDGKECIHHKTTESVIPTCESFAADFCSTTGQESVTDILLPHLISDWVPFSVNDQKEEEVAFGESVDQFFECFDGVRSYQSALGNSGILNWTCSVFSAITAASSLASGSLHVPTEQQHVETNLKATIAGISVVFAFHDENQRHSCDLGGAQANVGLNVHYLGAECRDMLFILQVSPQNMKFEVTVKHIELADYFRDEKDVMDFALRGYNNTTLLVQHLQAEVQGALPPFALSAEDPDIEIHRSGSASFNENDVVKVILLRTSGVSHCLSTVNSSSVNGSLAGTTSFSLKLPPIVFWVNFQTINALLDLSKEFENSLEMNCNRSSGSCDTTLSSRKSLRGNIFLPNARVILCFPFETDENSGCYSSWDQFLVLDLSLPSSLDKGIIQDTCTIPNADSQNGFSSRASRSLHLNVGNLDIYLVTSSCEDGCEINSRDVQRHGFSAHRILSATNRTSSFSVISMLWQERPVTGPWIAKKAKLLVTSEDSRTRNKFVGKGYEFASVTTVKDLGDLNSCTRQEMILSSAFFLHLRLSPITVNLSSSQYNDLHHLINQVTNGLSRAACDPVSVSEESSVTQMSILVECDSVEILINLDRVESIKGSLQSELPGSWHSLKLKIQKFELLSVSNIGGIKGAKFLWFAHGEGKLWGSITSAPEQELLLILCSNSTMKRGDGEGLNKLSSRLAGSDIIHLWDPESVHSYASITVRCSTVIAVGGRLDWLEAISSFFSLPSAETEQPGYNSSQNGDLSSSFGSSFYLNLVDIGLSYEPYFKHLLGMCERYVACMLAASSLNLSNTTMADSTDNEYKIRIQDLGLLVCAVSEPENVGGIYSSERLHKVGYVKVAGEALFEAILRTNCRNDLLWELECSESHIHLDTCHDTTSGLICLVSQIQRLFAPDVEESIIHLQTRWNNVQQAQERNDSSDETMIFNSDSAPPAAQVHTSSDDEKTEHGVFALMDEICEDAFNLGGHAASQLGSCESQIHISLDGSFLGEACNLNIRTPEFFSRNLSFNGTVPVIGLDSHQSSVPQNGGFPEFIESYYMSESSHLSEISAAKESSHEILEFKSRNMGNEDLERGNSGWYGDASLRIVENHIPEMSEQAGLRQSVKGKLPSTDHRRPDDLGKARGRVLLKNVNVRWKMFAGSDWNHPGKTGQPSANISGRDAATCLELALSGMDFQYDIFPDGEIFVSKLSLFIKDFHLYDNSRDAPWKLVLGYYHSKDHPRESSSKAFKLDLEAVRPDPSTPLEEYRLRIAVLPILLHLHQGQLDFLVSFFGGKNQSVDQSPSHCHASDGTKLSSTKNSNFARHAISEEALLPYFQKFDIWPILVRVDYSPCRVDLAALRAGKYVELVNLVPWKGVELNLKHVHAVGVYGWSSVCETIIGEWLEDISQNQIHKLLQGLPTFRSLVAVSSGAAKFVSLPVKNYKKDRRLIKGMQRGTIAFLRSISLEAVGLGVHLAAGAHEILLQAEYILSNIPSSVPWPVENRINSNIRTNQPKDAQQGIQQAYESLSDGLGRSASALVQTPLKKYQRGAGAGSALATAVQAAPAAAIAPASGLARAVHCALLGVRNSLDPEHKKESMEKYMGPAGVRNSLDPEHKKESMEKYLGPAGVRNSLDPERKKESMEKYLGPAGVRNSLDPEHKRESMEKNLGPAEPQEQI* 2004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1980 1994 - -
Vvi3g0480 2003 PANTHER AUTOPHAGY-RELATED 2, ISOFORM A 2 1927 IPR026849 GO:0006914
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1453 1467 - -
Vvi3g0480 2003 Pfam Autophagy-related protein C terminal domain 1834 1927 IPR015412 -
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1919 2003 - -
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1258 1285 - -
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1258 1291 - -
Vvi3g0480 2003 Pfam N-terminal region of Chorein or VPS13 20 117 IPR026854 -
Vvi3g0480 2003 MobiDBLite consensus disorder prediction 1443 1467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0480 Vvi-Chr3 4096054 4121846 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0480 K17906 - vvi:100257340 3921.7