Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0477 ATGAATCTTTCACATTCTGGCCGTGAGATATATGGTGCAGATGGGCATGTGGGTCATGCCACAGCTCCTGGATTCCCAAATCCTAGTCCAGCCCCACCTTATGCTACCCCATATGTAGTGCAGTATCCCGATGGCACCATCCGCTGGTCTACTGGTCTTTGCCATTGCACAGATGATCCTGCAAATTGCTTGATCACTTGCTGTTGCCCTTGCATCACATTTGGGCAGATTGCTGAGATAGTGAGTAAAGGATCCTCAAATTGTGCGGTGAGTGGTACGCTGTATGCGCTACTCTGTTTTACTGGTTTGTCGTGCTTGTATTCTTGTGCTTACCGTTCGAGGTTGAGGGCTGAGTATGACTTGGAGGAGTCACCTTGTGCTGATTGCCTGGTCCACTTCTGCTGTGAGGGATGCTCACTGTGCCAGGAGTACAGAGAGCTCAAGAACCGTGGATTGGACATGGGGATAGGTTGGGAAGCCAATGTTGATAGACAAAGGCGGGGAATTACTCTACCTCCGGTGGTGGCACAAGGCATGACCAGATGA 546 0.5037 MNLSHSGREIYGADGHVGHATAPGFPNPSPAPPYATPYVVQYPDGTIRWSTGLCHCTDDPANCLITCCCPCITFGQIAEIVSKGSSNCAVSGTLYALLCFTGLSCLYSCAYRSRLRAEYDLEESPCADCLVHFCCEGCSLCQEYRELKNRGLDMGIGWEANVDRQRRGITLPPVVAQGMTR* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0477 181 PANTHER DUF614 FAMILY PROTEIN-RELATED 47 156 IPR006461 -
Vvi3g0477 181 NCBIfam uncharacterized Cys-rich domain 48 149 IPR006461 -
Vvi3g0477 181 Pfam PLAC8 family 49 146 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0477 Vvi-Chr3 4067224 4072020 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0477 - - vvi:100241734 365.54