Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0475 ATGGCGTCTCTCTTGTCCATTCGACGTGCACGAACCCCACTATTCTCTTTTTTATCCAAGGTACCGTCTCCTTACTCTTCTCACTTCATCTTCACCCTCACCAAAACCCTAAGCACCTCTGCTGTCCCAAATGACTACCAGAGACCCCAACAGCAACCACCCTCTGAGCCTAGGGATTTTCAAGACCAGAGAAACCCTAGCTACAACTGGAACTCACAGACCCAGAGTCAGAGCTACCCTCAACATATGAATTATGGGGATCAGAATCAAAGTTATCCCAATCGGGGATACCCTAATCAGGGTCAGGGTTATCCTCAACATGAGAACCCTAATCAGTGGAATCGCCAGACTCCAACGTACCCTCAACCTCAAAACCCTAGTCGCCCGAACCATCAAAATCAGTATTATCCGCCAACTGGAAACCCTAGTCTGGGTCAGGGCTATCCTCAGCAGAGAAGCCCTAATCAGTGGAATCCTCAACATCAAAACCCTAGTCATTTGAACAATCAGAATCAGAATTACCCGCAACCCGGAAGCCGGAATCTTCCGAGCAATCAAAATCAGAGTTACCCACATCAGGGAAGCCCCAGCCAATGGAACAATCAGAACCCGAATCAAGCACAGATTGTGGAGAATCAAGTTTCACATGCGCCTCCTTCAGTCGCTGATTTGATGAATTTATGTCAAGAGGGGAAGGTTAAAGAAGCTGTTGAATTGATGGAAAAAGGGGTCCGTGCTGATGCTCAGTGTTTCTACGCACTCTTTAATTCGTGTGGGAGTCCGAAGTTGCTTGAAGAGGCTAAAAAGGTTCATGATTTCTTTTTACAATCAACTTTTAGGAGTGATCTTCAATTGAATAATAAAGTGCTCGAGATGTATGGGAACTGTGGGAGTATGACTGATGCACGTAGAGTGTTCGACCATATGGCCAATAGGGATATGGATTCTTGGCATTTGATGATAAATGGGTATGCCAATAATGCTATGGGAGATGATGGGTTACAGTTATATGAACAGATGCGGAAGTTAGGGTTAGAGCCCAATGAGCAAACTTTCCTTGCTGTTTTATCCACATGTGCCAGTGCGGAGGCCGTAGAAGAAGGATTTATACATTTTGAATCGATGAAGACTGAGTATGGAATCACTCCAACATTTGAGCATTATGTGGGGATTATAGATGTTCTTGGAAAATCGGGGCATGTCATTGAGGCTAAGGAGTTTATAGAGCAAATGCCTGTGGAGCCTTCTGCAGTTGTTTGGGAGGCATTGATGAATTATGCTAAAATTCATGGAGATATTGATCTTGAAGACCATGCTGAGGAGTTAATGGTTGCTCTTGACCCATTGAAGGCTGTTGCCAATAAGACCCCGACACCACCACCCAAGAAGCGCACTGCAATCAACATGCTTGATGGGAAAAACAGATTAAGTGAGTTTCGGAATCCAACCCTTTACAAGGATGATGAAAAGTTGAAGAGCTTGAATGGGATGAAAGAAGCAGGCTATGTGCCTGACACAAGATATGTTCTTCATGATATTGATCAGGAGGCCAAAGAGCAGGCCTTGCTTTATCACAGTGAGCGCTTAGCAATTGCATATGGTTTGATTAGTACTCCAGCAAGGACACCTCTTAGGATCATTAAGAACCTTCGTGTCTGCGGTGACTGTCACAATGCAATTAAGATCATGTCCAAGATTGTTGGAAGGGAGTTGATTGTTAGGGACAATAAACGGTTTCATCATTTTAAGGATGGGAAATGCTCTTGTGGAGATTACTGGTAA 1782 0.4428 MASLLSIRRARTPLFSFLSKVPSPYSSHFIFTLTKTLSTSAVPNDYQRPQQQPPSEPRDFQDQRNPSYNWNSQTQSQSYPQHMNYGDQNQSYPNRGYPNQGQGYPQHENPNQWNRQTPTYPQPQNPSRPNHQNQYYPPTGNPSLGQGYPQQRSPNQWNPQHQNPSHLNNQNQNYPQPGSRNLPSNQNQSYPHQGSPSQWNNQNPNQAQIVENQVSHAPPSVADLMNLCQEGKVKEAVELMEKGVRADAQCFYALFNSCGSPKLLEEAKKVHDFFLQSTFRSDLQLNNKVLEMYGNCGSMTDARRVFDHMANRDMDSWHLMINGYANNAMGDDGLQLYEQMRKLGLEPNEQTFLAVLSTCASAEAVEEGFIHFESMKTEYGITPTFEHYVGIIDVLGKSGHVIEAKEFIEQMPVEPSAVVWEALMNYAKIHGDIDLEDHAEELMVALDPLKAVANKTPTPPPKKRTAINMLDGKNRLSEFRNPTLYKDDEKLKSLNGMKEAGYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSKIVGRELIVRDNKRFHHFKDGKCSCGDYW* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0475 593 Gene3D Tetratricopeptide repeat domain 222 377 IPR011990 GO:0005515
Vvi3g0475 593 Pfam PPR repeat 388 412 IPR002885 -
Vvi3g0475 593 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 313 458 - -
Vvi3g0475 593 Pfam PPR repeat family 316 360 IPR002885 -
Vvi3g0475 593 MobiDBLite consensus disorder prediction 41 203 - -
Vvi3g0475 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Vvi3g0475 593 NCBIfam pentatricopeptide repeat 316 349 IPR002885 -
Vvi3g0475 593 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 228 451 IPR046960 GO:0003723|GO:0009451
Vvi3g0475 593 Pfam DYW family of nucleic acid deaminases 501 593 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0475 Vvi-Chr3 4057654 4059435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0475 211 593 Glycoside Hydrolase AT3G49170 34.300 9.64e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0475 - - vvi:100260539 1208.74