Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0474 ATGTCAACTCCTAGTTTTCTTGATTTCCAGTACAATATTTCCAAAAGGAAATACCTGCGGAAGCCATCCCGACTGTTTTCTTCTAGGGACAGACAGAATTCAGACTTGCCACCGATTTTCCATCTCAACATGGATGAGCTGAAGAAAGTGTTTGATAAATTCGACTCCAACAAAGACGGGAAGATATCAGAGGAAGAGTACAAGGCGGTGCTGGGAGCCTTGGTGAAGGAAGGTGTAAGAACGGAGGTGGAGAAGATATTCCAGGTAGCTGATCTTGATGGAGACGGGTTTATCGATTTCAAAGAGTTTGTGGAAGTGCACAAGAAGGGAGGGGGAGTGAAGACAAGGGACATACAGAGTGCGTTTCGGGCATTTGATTTGAACCGGGATGGGAAAATAAACGCAGAGGAATTGTTGGAGGTGTTGGGGAGGCTAGGGGAGAGGTGCAGCTTGGAGGAATGCAGAAGGATGGTGAGGGGAGTGGACACTGATGGGGATGGTGCGGTTGACATTGATGAATTCACTACCATGATGACTCGCTCCATGTAA 549 0.4718 MSTPSFLDFQYNISKRKYLRKPSRLFSSRDRQNSDLPPIFHLNMDELKKVFDKFDSNKDGKISEEEYKAVLGALVKEGVRTEVEKIFQVADLDGDGFIDFKEFVEVHKKGGGVKTRDIQSAFRAFDLNRDGKINAEELLEVLGRLGERCSLEECRRMVRGVDTDGDGAVDIDEFTTMMTRSM* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0474 182 ProSiteProfiles EF-hand calcium-binding domain profile. 78 112 IPR002048 GO:0005509
Vvi3g0474 182 ProSiteProfiles EF-hand calcium-binding domain profile. 42 77 IPR002048 GO:0005509
Vvi3g0474 182 Gene3D - 114 182 - -
Vvi3g0474 182 PRINTS Recoverin family signature 86 107 - -
Vvi3g0474 182 PRINTS Recoverin family signature 131 149 - -
Vvi3g0474 182 ProSitePatterns EF-hand calcium-binding domain. 55 67 IPR018247 -
Vvi3g0474 182 SMART efh_1 117 145 IPR002048 GO:0005509
Vvi3g0474 182 SMART efh_1 46 74 IPR002048 GO:0005509
Vvi3g0474 182 SMART efh_1 82 110 IPR002048 GO:0005509
Vvi3g0474 182 SMART efh_1 153 181 IPR002048 GO:0005509
Vvi3g0474 182 FunFam calmodulin-like protein 3 112 182 - -
Vvi3g0474 182 ProSiteProfiles EF-hand calcium-binding domain profile. 113 148 IPR002048 GO:0005509
Vvi3g0474 182 SUPERFAMILY EF-hand 44 180 IPR011992 -
Vvi3g0474 182 Pfam EF-hand domain pair 45 105 IPR002048 GO:0005509
Vvi3g0474 182 Pfam EF-hand domain pair 117 178 IPR002048 GO:0005509
Vvi3g0474 182 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 117 179 - -
Vvi3g0474 182 CDD EFh 46 108 IPR002048 GO:0005509
Vvi3g0474 182 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Vvi3g0474 182 ProSiteProfiles EF-hand calcium-binding domain profile. 149 182 IPR002048 GO:0005509
Vvi3g0474 182 CDD EFh 117 179 IPR002048 GO:0005509
Vvi3g0474 182 Gene3D - 10 113 - -
Vvi3g0474 182 ProSitePatterns EF-hand calcium-binding domain. 126 138 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0474 Vvi-Chr3 4054284 4054832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0474 117 181 EF-hand Containing Proteins AT2G15680 38.462 6.87e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0474 K13448 - vvi:100257203 360.147