Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0450 ATGCTCTTCATTTCCACGCCAAAAGGGGCATTAGGTTTTCAAACCCACCTCTCCGTCTCAAGGTTCTTTGCTCCGCTGATTACGACAAAGTTTCAGCACTCTTCAAAAATGTGGCAGAATGAAGGATTGGGTGAGCGCTGTGCTCTCTGTCTGAGCTTATCAGCTGCAGTGGTCACTGGAGACTCATGGGAAAAATCAATTCTGAACAGCGAAATCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGGCCCTGCAGGATGGTTCACCGGGTGATAGATGAGATTGCAGAAGATTATGCAGGGAGACTTAAATGCTTTGTGCTGAACACAGACCATGACTTGCATATTGCTGAGAACTATGAAATTAAGGCTGTGCCAGTGGTTTTGCTGTTTAAAAATGGAGAGAAACGTGAATCTGTAGTTGGAACCATGCCTAAGGAGTTCTATGTGGCTGCCATTGAGAGGGTCCTCTCATCTTAA 483 0.4555 MLFISTPKGALGFQTHLSVSRFFAPLITTKFQHSSKMWQNEGLGERCALCLSLSAAVVTGDSWEKSILNSEIPVLVEFYASWCGPCRMVHRVIDEIAEDYAGRLKCFVLNTDHDLHIAENYEIKAVPVVLLFKNGEKRESVVGTMPKEFYVAAIERVLSS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0450 160 SUPERFAMILY Thioredoxin-like 51 159 IPR036249 -
Vvi3g0450 160 FunFam Thioredoxin 51 160 - -
Vvi3g0450 160 CDD TRX_family 61 155 - -
Vvi3g0450 160 Gene3D Glutaredoxin 56 159 - -
Vvi3g0450 160 PANTHER GEO12009P1 58 158 - -
Vvi3g0450 160 ProSitePatterns Thioredoxin family active site. 75 93 IPR017937 -
Vvi3g0450 160 PRINTS Thioredoxin family signature 74 82 - -
Vvi3g0450 160 PRINTS Thioredoxin family signature 122 133 - -
Vvi3g0450 160 PRINTS Thioredoxin family signature 82 91 - -
Vvi3g0450 160 ProSiteProfiles Thioredoxin domain profile. 49 159 IPR013766 -
Vvi3g0450 160 Pfam Thioredoxin 56 154 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0450 Vvi-Chr3 3867153 3870677 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0450 K03671 - vvi:100248705 326.25