Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0433 ATGGAGATCGCGCCGGCGGTGCTGGAAGCCAAGGCCAACGAGAACGACAACCCCACCACCGTCTCTGTCGACAGCCTCAAAGCTTCTTCTTCGTCGTTATCATCGCCTCGCAGCTCGCCGGAAGATGAAACGAGATCCCCAGGGAAATATGACGAGGAGGAGGACGAGGGGGACGTTTGCCGCATCTGCCGAAATCCCGGTGACGCAGAGAACCCGCTCCGGTACCCTTGTGCGTGTAGCGGTAGCATAAAGTTTGTTCATCAGGATTGTCTCCTTCAGTGGCTCAATCACAGCAACGCTCGTCAATGCGAGGTTTGCAAATATGCATTTTCGTTCTCCCCTGTGTATGCTGAAAATGCTCCAGCAAGGCTTCCTTTTCAGGAGTTTGTAGTTGGAATGGCAATGAAAGCTTGCCATGTTCTGCAATTCTTTTTGCGCCTTAGTTTTGTACTTTCTGTTTGGCTCCTTATCATACCCTTCATTACATTTTGGATATGGCGATTTTCTTTTGTGAGGAGCTTTGGTGAAGCCCAGAGATTGTTCTTGAGTCATTTATCTACTACAGTTATTCTTACTGATTGTCTACATGGATTCCTGCTATCTGCAAGCATTGTTTTCATATTTCTTGGAGCCACTTCTTTGAGGGATTATGTTAGACATTTAAGAGAGCTTGGGGGACCAGATGCAGAAAGGGAAGATGAAGGTGAAAGAAATCCTCGTGCTGCAAGAAGACCTCCTGGACAAGCTAATAGGAATTTTGCGAGGGAAGGAAATGGTGAAGATGCTGGTGGAGCCCAGGGAATTGCTGGAGCAGGGCAACTAGATGGAAGGAACCCAGACAATGTTGCTGTCCGGTGGGAGATGCAGGCAGCTCGCCTTGAAGCTCACGTTGAACAGATGTTTGATGGTCTTGATGATGCTGATGGTGCAGAGGATGTGCCCTTTGATGAGCTTGTTGGCATGCAAGGGCCTGTTTTTCATTTGGTTGAAAATGCTTTTACTGTTCTGGCAAGCAATATGATATTCCTTGGCGTTGTGATCTTTTTGCCCTTTTCATTAGGTCGGGTTATACTCCATTATATATCGTGGCTTTTCTCTTCTGCTACTGGTCCAGTATTGTCAACATTCATGCCACTTACAGAGTCAGCCCTCTCCTTAGCAAATATTACACTGAAGAATGCATTAACTGCTGTAACTGATCTGTCATCTGAAAGCCAAGAAAATGGGCTGCTCGGTCAGGTCGCAGAAATGTTAAAAGTAAACACAAGTGGATTAAATGAAACCTCGAACAACATTAGCATGCCCCTGTCAGCAGATTTCTTGAAAGGGGCAACTATTGGAACATCACGACTTTCTGATGTAACAACGCTTGCTATTGGATACATGTTTGTTTTCTCCCTAATCTTCTTCTACCTCGGCATTGTTGCTTTAATTCGGTATACTAAAGGTGAACCTTTGACCATGGGGAGGTTCTATGGTATCTCTTCAATAGCAGAGACAATCCCATCCCTTTTCAGGCAGTTCTTGGCAGCAATGAGGCACTTAATGACTATGATTAAAGTTGCTTTCCTTCTGGTCATTGAGCTGGGGGTATTTCCTTTAATGTGTGGCTGGTGGCTGGATGTTTGTACCATAAGAATGTTCGGGAAGACTCTTTCTCAAAGAGTCCAATTCTTTTCAGTTTCTCCCCTGGCGAGTTCATTAGTTCATTGGATTGTTGGGATCGTGTACATGCTACAAATAAGCATCTTTGTCAGCCTTCTTCGTGGGGTTTTGCGTAATGGAGTTCTGTACTTTCTTCGAGATCCAGCTGATCCAAACTATAATCCCTTTCGTGATCTAATTGATGATCCTGCACATAAGCATGCTCGCAGGGTTCTGTTATCTGTTGCTGTCTATGGGAGTTTAATAGTGATGCTGGTATTTTTACCAGTCAAACTTGCCATGAGATTGGCTCCCTCCATTTTTCCGCTTGATATTGTTGTCTCCGACCCATTTACTGAGATTCCTGCTGATATGCTTCTCTTCCAAATTTGCATTCCATTTGCTATTGAGCATTTTAAATTGCGGACAACGATCAAATCCTTTCTCCACTATTGGTTTACTGCAGTTGGCTGGGCACTTGGCTTAACAGATTTCTTACTGCCTAGACCTGATGACAATGGTGGACAGGAAAATGCAAATGGGGAACCAGTAAGGCAGGCCCTTTATGCAGTACCAGTAGATGAAATTGCACAACAGGATCAGCCACTAGGGGTACTTGAAGCTGTCGATGATTTAAATGGAAGCATTCATGCATCAGGGAATTCTAATATCACAGATGAGTATGATGCTGATGATCAATCTGATTCAGACAGGTACGGCTTTGTGCTTCGTATTGTCCTTTTGTTGGTGGTGGCTTGGATGACTCTACTTATCTTTAACTCCGCCTTGATAGTTGTACCTATTTCACTTGGACGAGCGCTCTTCAATGGCATTCCTCTTCTCCCAATAACTCATGGCATCAAGTGCAATGATTTATATTCTTTCATCATTGGAAGCTATGTCATTTGGACTGCTCTAGCTGGAGTCAGGTATTCCATTGAGCACATCAAAACAAGGAGGGCTGTAGTTCTGTTGAGCCAAATGTGGAAGTGGTGTGTCATTGTTATTAAGAGTTCTGTTCTGTTGTCAATATGGATATTTGTCATCCCAGTATTAATTGGACTGCTGTTTGAGCTTCTGGTAATTGTGCCAATGCGGGTGCCTGTGGATGAAAGCCCTGTGTTCCTCTTGTATCAGGACTGGGCATTGGGACTCATCTTTCTTAAGATCTGGACTAGACTGGTTATGTTGGATCATATGATGCCCTTGGTGGATGAGAGTTGGCGAATAAAATTTGAAAGAGTGAGAGAAGATGGTTTCTCCAGGCTGCAGGGCCTTTGGGTGCTAAGGGAGATTGTGTTCCCAATCATAATGAAGCTGCTGACAGCCCTGTGTGTTCCTTACGTTTTAGCCAGAGGGGTGTTCCCTGTGCTTGGGCTTCATAACTATGGAGAGGACACAGAAGGCAAGCAAAATGAGGTTGAAGATATTCCCTCGGAAACACAAAGTGCTAATTTGCATGGCACTGCTTTAATTCGACATGACAGAGAAGCTGACATAGGAATGAGGCTGAGGCGTGCTAATCGACATGATGCCTAA 3183 0.4461 MEIAPAVLEAKANENDNPTTVSVDSLKASSSSLSSPRSSPEDETRSPGKYDEEEDEGDVCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKYAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRFSFVRSFGEAQRLFLSHLSTTVILTDCLHGFLLSASIVFIFLGATSLRDYVRHLRELGGPDAEREDEGERNPRAARRPPGQANRNFAREGNGEDAGGAQGIAGAGQLDGRNPDNVAVRWEMQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVIFLPFSLGRVILHYISWLFSSATGPVLSTFMPLTESALSLANITLKNALTAVTDLSSESQENGLLGQVAEMLKVNTSGLNETSNNISMPLSADFLKGATIGTSRLSDVTTLAIGYMFVFSLIFFYLGIVALIRYTKGEPLTMGRFYGISSIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDVCTIRMFGKTLSQRVQFFSVSPLASSLVHWIVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPAHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRLAPSIFPLDIVVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSFLHYWFTAVGWALGLTDFLLPRPDDNGGQENANGEPVRQALYAVPVDEIAQQDQPLGVLEAVDDLNGSIHASGNSNITDEYDADDQSDSDRYGFVLRIVLLLVVAWMTLLIFNSALIVVPISLGRALFNGIPLLPITHGIKCNDLYSFIIGSYVIWTALAGVRYSIEHIKTRRAVVLLSQMWKWCVIVIKSSVLLSIWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRIKFERVREDGFSRLQGLWVLREIVFPIIMKLLTALCVPYVLARGVFPVLGLHNYGEDTEGKQNEVEDIPSETQSANLHGTALIRHDREADIGMRLRRANRHDA* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0433 1060 SMART ringv_2 59 107 IPR011016 GO:0008270
Vvi3g0433 1060 MobiDBLite consensus disorder prediction 227 276 - -
Vvi3g0433 1060 MobiDBLite consensus disorder prediction 13 41 - -
Vvi3g0433 1060 ProSiteProfiles Zinc finger RING-CH-type profile. 52 113 IPR011016 GO:0008270
Vvi3g0433 1060 FunFam Probable E3 ubiquitin ligase SUD1 46 118 - -
Vvi3g0433 1060 PANTHER SSM4 PROTEIN 42 1009 - -
Vvi3g0433 1060 Pfam RING-variant domain 60 106 IPR011016 GO:0008270
Vvi3g0433 1060 ProSiteProfiles Zinc finger RING-type profile. 60 107 IPR001841 -
Vvi3g0433 1060 MobiDBLite consensus disorder prediction 1 53 - -
Vvi3g0433 1060 SUPERFAMILY RING/U-box 56 110 - -
Vvi3g0433 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 118 IPR013083 -
Vvi3g0433 1060 CDD RING_CH-C4HC3_MARCH6 59 108 - -
Vvi3g0433 1060 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0433 Vvi-Chr3 3628918 3643243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0433 K10661 - vvi:100262331 2052.33