Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0409 ATGGGGAAGGTGAAGGGCAAGCACCGTTTGGACAAGTTCTACCACCTCGCCAAAGAGCACGGTTACCGTTCTCGAGCCGCATGGAAGCTCGTTCAGCTCGATTCAAAGTACAACTTCCTCCGCTCCTCCCGCGCCGTCCTCGACCTCTGCGCTGCACCTGGCGGTTGGATGCAAGCCGCCGTCGAACGCGTTCCCGTCGGCAGCTTCATCCTCGGCGTTGATCTCAATCCTATCGCTCCGGTCCGCGGCGCAATCTCCATCGAAGAGGACATCACGAAGCCTGCGTGTAAGGCTAGGGTTAAGAAGCTGATGAGTGAGTACGGATGTGCCGCTTTCGATATTGTTCTCCATGACGGTTCTCCGAATATAGGAGGCGCGTGGACGCAGGAGGCCACGGCTCAGAATGCGCTGGTTATCGATGCGTTGAGGCTCGCGACTCAGTTCTTGGCTCCTAAAGGTGCATTTGTTACTAAGGTTTTCAGGTCACAAGACTACAATTCAGTCCTCTACTGCCTCAAGCAGCTGTTTGAGAAGGTTGAGGTTGATAAGCCAGCTGCTAGTCGTTCAACTTCTGCAGAAATTTTTGTTTTGGGCCTTAAGTATAAAGCTCCTGCAAAGATTGATCCACGCCTTCTTGATGTGAAGCATTTATTTCAGGGCACCATAGAACCTCGAAAGGTGGTGGATGTACTTAGGGGAACAAAGCAAAAGAGACACCGTGATGGGTATGAGGATGGGGACACAACTTTGAGGAAAGTTTCTTCAGCTACAAACTTTATCTGGTCTGATACTCCTCTTGAGATCCTTGGTTCAGTTACTTCTATAAGCTTTGATGATCCTGCTTCTCTGCCTATAAAGGATCATGCTTTAACAACAGAAGAGGTTAAAACTCTTTGTGATGATCTGCGTGTTTTGGGAAAGCAAGACTTCAAGCATCTTTTGAAGTGGCGGATGCATGTAAGGAAGGCTTTATCCCCTGTACAAAAGGCTACTTCTACTGCTGCAGAGGATGACCATGAGAAAGTTGTTGATGAAGATGAGAGAATGCTTAATGAAATGGAGGAGTTGACTTATGCTATGGAGCGCAAAAAGAAAAGAACAAAGAAACTTCTTGCAAAAAGACAAGCAAAGGATAAGGCTCGGAAGGTAACAGGAATGCAAGTAGATGCGCTGGAAGAGGGTTATACTGACCATGAATTATTCTCTCTTTCTTCAATCAAGGCGAAGAAAGACCTTCTTGCTGTTAATTCCACCGAGTATGATGAGGGTGATGGTGTGGTAGATAGTGAAGATGAAAGAACCCGTGAGGAAACCCAGGAGCATTCTGCCAGTGATATGGATTCTGATGAAGAACGGAGACGATATGATGAGCAAATGGAAGAGATGCTTGATCAAGTATACGAACAGTTTGTGGCCAGAAGGGAGGGAAGTACAAAGCAGCGTAAGCGTGCAAGAAAAAAGCATTCTGAGGATGACCTTTTGGAGGATGGTGATGATGATATAATTCATTCTGATCATGATTCCGATAACGACAATCAGGCTGATCTTGAAGCAAATCCTCTCATGGTCCCACTCCATGGAGAGGAAATGCCGACTCAAAGGGAGATTACAGATAAGTGGTTTAGCCAGGACATCTTTGCTGAAGCAGCAGAGGAGGGAGATTTGGGGAAGCACGAGAGTGAAGATGAAATGGAGGTGGACAGACAGGAGAAAACACTCTCCATCCCAAAGAAGGCCAAGGAAAATAAAGCACGCAAACCTTCAGAGATCAATCCCCCTCAAATTGAAGCTTCCAAGGCAGAAGAAGATTTTGAGATTGTCCCTGCTCCAAGTACAGATTCGAGTGATGACTCATCCTCGGACGAATCAGATGATGAAGATATTCATGCAAAAGCTGAGATATTGGCTTGTGCAAAGAAGATGCTAAGGAAAAAGGAGAGGGAGAGGATACTTGATGATGCTTATAATAAGTACATGTTTCATGACAAAGGCTTGCCTCAATGGTTTGCGGATGAGGAAGCCAGACACTGCCAGACTATTAAGCCTGTGACCAAAGAGGAGATAGCTGCAATGAGAGCACAATTTAAAGAAATTGATGCCCGGCCTGCAAAGAAGGTAGCAGAGGCCAAAGCCCGAAAGAAAAGGGCAGCAATGAGGAAGCTAGAGAAGGTTAGGAAGAAGGCAAACACTATTTCAGATCAGACTGACATCTCTGATCGTTCAAAGGGGAGGCTGATTGAACAACTTTATAAGAAGGCAGCGCCTAAAAGGCCTCAAAAGGAATATGTGGTTGCAAAGAAAGGGGTTCAAGTCAGGGCTGGGAAGGGTAAAGTCCTTGTTGATCGGCGCATGAAGAAGGATGCCAGGTCAAGAGGAATGAGCAAGCAAGGGAAAGGCCCTTCAAAGAAGGGTGGTTTCAGGAAGGGAAAGAACGCAAATGGTCAAAAGGGTAATAAAGGGTCTGCAAAGGCTTCAGCTAAGAGCGGAAAGGGGGGAAGGAAAGGAAATAGGATGAACATGCACGACTGA 2529 0.4658 MGKVKGKHRLDKFYHLAKEHGYRSRAAWKLVQLDSKYNFLRSSRAVLDLCAAPGGWMQAAVERVPVGSFILGVDLNPIAPVRGAISIEEDITKPACKARVKKLMSEYGCAAFDIVLHDGSPNIGGAWTQEATAQNALVIDALRLATQFLAPKGAFVTKVFRSQDYNSVLYCLKQLFEKVEVDKPAASRSTSAEIFVLGLKYKAPAKIDPRLLDVKHLFQGTIEPRKVVDVLRGTKQKRHRDGYEDGDTTLRKVSSATNFIWSDTPLEILGSVTSISFDDPASLPIKDHALTTEEVKTLCDDLRVLGKQDFKHLLKWRMHVRKALSPVQKATSTAAEDDHEKVVDEDERMLNEMEELTYAMERKKKRTKKLLAKRQAKDKARKVTGMQVDALEEGYTDHELFSLSSIKAKKDLLAVNSTEYDEGDGVVDSEDERTREETQEHSASDMDSDEERRRYDEQMEEMLDQVYEQFVARREGSTKQRKRARKKHSEDDLLEDGDDDIIHSDHDSDNDNQADLEANPLMVPLHGEEMPTQREITDKWFSQDIFAEAAEEGDLGKHESEDEMEVDRQEKTLSIPKKAKENKARKPSEINPPQIEASKAEEDFEIVPAPSTDSSDDSSSDESDDEDIHAKAEILACAKKMLRKKERERILDDAYNKYMFHDKGLPQWFADEEARHCQTIKPVTKEEIAAMRAQFKEIDARPAKKVAEAKARKKRAAMRKLEKVRKKANTISDQTDISDRSKGRLIEQLYKKAAPKRPQKEYVVAKKGVQVRAGKGKVLVDRRMKKDARSRGMSKQGKGPSKKGGFRKGKNANGQKGNKGSAKASAKSGKGGRKGNRMNMHD* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0409 842 Coils Coil 704 734 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 550 587 - -
Vvi3g0409 842 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 798 IPR028589 GO:0008649|GO:0031167
Vvi3g0409 842 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 5 234 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 766 842 - -
Vvi3g0409 842 Pfam Spb1 C-terminal domain 599 793 IPR012920 GO:0005634|GO:0006364|GO:0008168
Vvi3g0409 842 MobiDBLite consensus disorder prediction 420 628 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 717 742 - -
Vvi3g0409 842 FunFam AdoMet-dependent rRNA methyltransferase SPB1 19 208 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 723 742 - -
Vvi3g0409 842 Coils Coil 336 356 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 485 513 - -
Vvi3g0409 842 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Vvi3g0409 842 MobiDBLite consensus disorder prediction 776 793 - -
Vvi3g0409 842 MobiDBLite consensus disorder prediction 428 461 - -
Vvi3g0409 842 Pfam Domain of unknown function (DUF3381) 234 381 IPR024576 -
Vvi3g0409 842 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Vvi3g0409 842 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Vvi3g0409 842 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0409 K14857 - vvi:100255646 1509.97